PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.E1NAP
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 673aa    MW: 76763.8 Da    PI: 8.102
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.E1NAPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.56.7e-21163256189
         FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  ++Yne++++ GFsvr+sk  ++     +gei+++ fvCs+eg+r+ ++ + +++++ +r+ tr+gC+a+ kv+ ++ +++w v+++  +HnH++
  Aradu.E1NAP 163 DYYNEFGRMKGFSVRRSKVGRRtkqGAEGEIIWQVFVCSREGERDGKHMHrEDRKKDPRPITRCGCEARNKVHADDaSERWFVEQFCDNHNHPM 256
                  69**************98766643367899**************99988846677789******************9***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-19163256IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.237455491IPR007527Zinc finger, SWIM-type
SMARTSM005750.0062466493IPR006564Zinc finger, PMZ-type
PfamPF044343.0E-4467490IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MELRKQPKEG GGDENSCEAS FGRTARRRRY TTEEKAGLNG AEAEIEIWLS RGSNKGRKWT  60
TQDNEIHKYA LSPNGFVEPS YEFSSNFDRV HASQDADDGM SGETVPVEEV EAMDSSTADA  120
DIDAEAAVRI VEGIGSFGAI EFSSLTAKDM LTTEFTSLQA AYDYYNEFGR MKGFSVRRSK  180
VGRRTKQGAE GEIIWQVFVC SREGERDGKH MHREDRKKDP RPITRCGCEA RNKVHADDAS  240
ERWFVEQFCD NHNHPMLYAR FRGLSRSHRA VKEGDLHQIN SMRKSGLRVP TIFCAFANQS  300
GGFETVGMAD HGLEDHPWIV DMYAKKHSWS NAHIRGKFFA GLKTTSRCEA LNMQLGKFIH  360
NRYNLREFVE HFQHYLEFMR RRELVADYKS AYGEPVVKTK LEAIEQFAAT VYTKEVFELF  420
REVLMLASNV RVVSTKRTST CVLFKVAMYC KQRSWAVSWA EEDDEFSCSC QRMESFGLPC  480
VHMVGVMVYL NMTAIPKGLI LDRWTKRAKQ PRAHCDGTRV GEIPEAAYMS IHAVMLDDCR  540
ELVSLSCRFF EDYVDVKTRL AKECQSLRDK YRQRLGVAEE VSRVSVRDPM RPRYKGCGRR  600
VVTSRGKFRR VQRCRLCGKG EHNSCKCQQS STGENIDSFE ADAAYESMKA GEGVRSTTNL  660
SELAEPFFLA VTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.E1NAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015934909.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445APE80.0A0A445APE8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1381925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-25far-red elongated hypocotyls 3