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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.DI6JM | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | CPP | ||||||||
Protein Properties | Length: 717aa MW: 79114 Da PI: 7.6842 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.2 | 8.8e-15 | 471 | 509 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+CkkskClk+YCeCfaa+++C+ +C+C+dC Nk Aradu.DI6JM 471 DCKRCKCKKSKCLKLYCECFAARAYCTGNCSCKDCYNKL 509 689**********************************85 PP | |||||||
2 | TCR | 51.5 | 2e-16 | 552 | 591 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCk+s ClkkYCeCf+ag+ Cs +C+Ce+CkN+ Aradu.DI6JM 552 RHKRGCNCKQSVCLKKYCECFQAGVGCSLSCRCEGCKNTF 591 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.1E-13 | 470 | 511 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.914 | 471 | 592 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.6E-10 | 473 | 508 | IPR005172 | CRC domain |
SMART | SM01114 | 1.1E-17 | 552 | 593 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 5.2E-12 | 554 | 590 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 717 aa Download sequence Send to blast |
MRQNAISDHT IVLMLDQSAL LPGTFLSLLH ICTGCIFNHR YVKSNPHEVE NATWMLMPRT 60 TLVMDTPERN QINPPFSRVE DSPVFSFINS LSPIKPVKSA QVGQTFSSLS FPSPPRAFTS 120 SNLTCFKESK VLRRHNPFGA SRPGLSSEDG NKFQTSEEAI ADSFHPYNNS RESQGNFHDG 180 ISVVDDSIAL PGEHTDFSAE ILQALNYNNC GNPGSDPGHE ANSLEVFNQG LCQFDPKGQE 240 SECNWDNLIS GDTDFFVFNS PNDAAFKGIM QKPDSHFMSL VPESSIYNGL RDSKLKIEDY 300 RPEPLAITGQ MQDKHCVAMT SKIKEKPDVE LVSVMNRGTR RRCLNFETDS VQRKNSDDNL 360 KSGSLGYEKQ LVSAKRKSSS QQCTMPAVGL HLNAPDKEVI SNDESSCGIH LNVPSCTSVQ 420 IYTSYEHQEP LAIGVDSSNI GPEPAKDNSH ALYSTVNDVS QNSPKKKRHG DCKRCKCKKS 480 KCLKLYCECF AARAYCTGNC SCKDCYNKLV HKDKVIQVRK QIESRNPLAF APKVIAEPEI 540 GNDPNKTPAP ARHKRGCNCK QSVCLKKYCE CFQAGVGCSL SCRCEGCKNT FGRKDGANSI 600 GVEAQLEVEI EVCGKVVEKV SQRIEVQNSD NHPDFVPIST PFPLFSSLSE GKPNTRWSQP 660 PKHSQAVSDQ EMTDVLGGGG RSDRSPMTIK TSSPSGKRIS TSKGDLTLSF PSPNRHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-16 | 473 | 589 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 4e-16 | 473 | 589 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 463 | 478 | PKKKRHGDCKRCKCKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.DI6JM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015957751.1 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
Refseq | XP_015957759.1 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A445ARC5 | 0.0 | A0A445ARC5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G44670.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 7e-82 | TESMIN/TSO1-like CXC 2 |