PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YA

Protein Properties

Length: 204aa MW: 22625.9 Da PI: 7.8426

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.DH2U1	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102	5.5e-32	109	165	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +++rkpylheSRh+hAlrR+Rg+gGrF Aradu.DH2U1 109 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IRNRKPYLHESRHQHALRRARGCGGRF 165 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.2E-35	107	168	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.698	108	168	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.9E-27	110	165	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.9E-24	111	133	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	113	133	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	8.9E-24	142	165	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MTSTHDVTDN EAGEKEQSES QMQSLSANGI SDPGAGMQNN QYVTPAPLGT GYAMAPPPYP 60 YPDPYYRSVF APNDTQPYPP QPYGGHPMAH IQLMGIQQAG VPLPTNAIEE PVFVNAKQYH 120 GILRRRQSRA KAESENKAIR NRKPYLHESR HQHALRRARG CGGRFLNSKK DENQQDELSP 180 ADKSHSNDNH NPDKNNLAPS DRAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	108	173	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.DH2U1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015959290.1	1e-150	nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q84JP1	3e-62	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A444ZDS8	1e-149	A0A444ZDS8_ARAHY; Uncharacterized protein
STRING	GLYMA09G02770.2	1e-104	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-50	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]