PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.DAZ3P
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 464aa    MW: 53245.5 Da    PI: 8.9986
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.DAZ3PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.61.5e-1151129191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++  ++ei+++  +Cs+e + +++ +    +++t+ +   +C a++ ++         ++++l+H+H+++p
  Aradu.DAZ3P  51 KFYRNYAKAAGFSTRVRSTNRK--KNEIKNQLITCSREERWKSKISP---TEKTNLSAGLNCPARIYIHSL-------KEVVLDHSHPCCP 129
                  6****************98887..6679**********998887766...899***************987.......7899999999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-951129IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.013300336IPR007527Zinc finger, SWIM-type
PfamPF044349.3E-4301333IPR007527Zinc finger, SWIM-type
SMARTSM005750.0051311338IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDDSTSDCQL NQGKVDYEFE SNEVPEPLSV VDDQFVSKVG MTFITLEDAE KFYRNYAKAA  60
GFSTRVRSTN RKKNEIKNQL ITCSREERWK SKISPTEKTN LSAGLNCPAR IYIHSLKEVV  120
LDHSHPCCPS KAEMLKQHRE LSMSIRRTIE NNEEAVCCWV YSADLYEDRH IWVPIYLDHH  180
FWAGMRSTQR SESMHSFFNK FITQNSSLIQ FVKQYDNCLG SRQQAERESD AANFHTVIPC  240
ATKSSIEAQF QDVYTHQKFR KVQAQFRGKA NCITRLTNSA LGYSVYEVGE QVSSSIFDKF  300
VVTYDSVAAE LKCQCLLFES RGILCRHTLS VLSFEQVSQV SPRYILERWS KKVKRRHTHI  360
KSSHDEPLLD PGSKRFDELV FSFTKCLRIC IRIGGAECNS APCSPPRIRT RGRPKNRLGS  420
KLDKHIKNAS KKKKTKALNE LNLFDAGSVV HSNSSQYQGC VMTY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.DAZ3P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-164protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A444ZZ110.0A0A444ZZ11_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-34far-red elongated hypocotyls 3