PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.DA7MW
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 667aa    MW: 74872.3 Da    PI: 6.8529
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.DA7MWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.51.7e-161421556
                 HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +e++F+++++p++++r++L+k+lgL  +qVk+WFqNrR++ k
  Aradu.DA7MW  1 MEAVFKESPHPDESQRKQLSKQLGLAPSQVKFWFQNRRTQIK 42
                 799***********************************9877 PP
2START190.77.1e-601693903206
                  HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                   ++a +el+k+a+ +ep+Wv+s+    e++n+de+ + fe  ++          s+ea+r+ g+v+m+l  lv+++ld++ qW+e+++    ka+ ++
  Aradu.DA7MW 169 VNQAIEELIKMATIGEPLWVRSVetgrEILNYDEYEKVFEVHNNsriigrrsnMSIEASRENGIVFMDLSSLVQSFLDVN-QWKEMFPclisKAANVD 265
                  67899**********************************887779***********************************.***************** PP

                  EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
        START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                  vi++g      g++q     lq+l+p+vp R+++fvR++r+l++++w ivdvS+d  +++  ++s+ +++++pSg++ie+ks gh+kv wveh+++++
  Aradu.DA7MW 266 VICNGegsnrnGVVQ----LLQMLTPMVPtREVYFVRCCRKLSDEKWGIVDVSIDKVEDNI-DASLLKCRKRPSGCIIEDKSHGHCKVSWVEHWECEK 358
                  ******966555555....578999**********************************98.9*********************************** PP

                  SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                  +++h ++rs+v++g+a+ga++w +tlq qc++
  Aradu.DA7MW 359 SSVHRMYRSIVNNGTAFGARHWISTLQLQCQR 390
                  ******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.0E-6148IPR001356Homeobox domain
CDDcd000861.76E-13142No hitNo description
SuperFamilySSF466892.51E-13148IPR009057Homeodomain-like
PROSITE profilePS5007115.629144IPR001356Homeobox domain
PfamPF000467.2E-14142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-15151IPR009057Homeodomain-like
PROSITE patternPS0002701942IPR017970Homeobox, conserved site
PROSITE profilePS5084835.605158393IPR002913START domain
SuperFamilySSF559611.37E-27161390No hitNo description
CDDcd088751.54E-103162389No hitNo description
SMARTSM002346.9E-62167390IPR002913START domain
PfamPF018521.0E-46168390IPR002913START domain
SuperFamilySSF559618.24E-14410588No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MEAVFKESPH PDESQRKQLS KQLGLAPSQV KFWFQNRRTQ IKAIQERHES SLLKKEIEKL  60
MEENKAMREA ISKSCCPNCG MAMATTPTIT DDSSTISIEE QQLRLENAKL KAEVEKLREV  120
SGKYPSAGTI MYPSCSTSHE QVDNNRINSS MDFYNGIFGV EKSRIMEIVN QAIEELIKMA  180
TIGEPLWVRS VETGREILNY DEYEKVFEVH NNSRIIGRRS NMSIEASREN GIVFMDLSSL  240
VQSFLDVNQW KEMFPCLISK AANVDVICNG EGSNRNGVVQ LLQMLTPMVP TREVYFVRCC  300
RKLSDEKWGI VDVSIDKVED NIDASLLKCR KRPSGCIIED KSHGHCKVSW VEHWECEKSS  360
VHRMYRSIVN NGTAFGARHW ISTLQLQCQR LVFFMATNVP IKDSTGVATS AGRKSILKLG  420
ERMRWSFCHA IGASSFHTWT KVTSKNGEDI RISSRKNLND PGQPLGVILS AVSSVWLPLP  480
PNVLFHFLRD ENHRSQWDIM VTGGSSVQSI ATLAKGQDRG NAVNIHEITS KENIKWWILQ  540
DSSTNAYESM VVYAPVDIPS MKNVMNGCDS TNIPILPSGF SILPDGVDSR PLITSTTMMQ  600
QQQQEENMNT EEGGGSLLTM AFQVITNNNS NGSPSSAKLT LESVESVKSL VSCTLRNIKS  660
CLQCEED
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.DA7MW
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025617667.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A445BQ100.0A0A445BQ10_ARAHY; Uncharacterized protein
STRINGGLYMA15G01960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]