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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.D1DYZ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GRF | ||||||||
Protein Properties | Length: 456aa MW: 49031.3 Da PI: 7.7244 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 69.8 | 3.3e-22 | 98 | 139 | 1 | 42 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 daep rCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk+ Aradu.D1DYZ 98 DAEPNRCRRTDGKKWRCSREVAPNHKYCERHMHRGRTRSRKP 139 79**************************************96 PP | |||||||
2 | QLQ | 52.7 | 1.3e-18 | 35 | 66 | 2 | 33 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT aQ+ +L++Q+++yKy++a+ PvPpeLl+ Aradu.D1DYZ 35 PFTSAQWRELERQAMIYKYMMASIPVPPELLL 66 8*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.7E-10 | 34 | 71 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.918 | 35 | 70 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.6E-13 | 35 | 66 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.197 | 98 | 142 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.7E-19 | 99 | 139 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MGEFGVSLKE TKKNSVAAAT RTSGGMMAAS LGRFPFTSAQ WRELERQAMI YKYMMASIPV 60 PPELLLMPIA AASRSSPLEG GGGGGGFNLR LSSSNNNDAE PNRCRRTDGK KWRCSREVAP 120 NHKYCERHMH RGRTRSRKPR ARHDSHPYAA SSAAVTVAFS NHSTRKDPSS PHFLASATTN 180 HHSYLESASS LSLHNFGAGS VPSSREPRGL DWMLNGDPIS LGTSDSEWNT LMNNNKVGFN 240 AMSSCSNTEP QYMNSFPVYS PGLDQQHNKR SPTFLNPVLV PMETLQSDKP RVFIDAWSDA 300 ATDQETNDAD NKNSVSSIEK LSLSSLDLSM GGGYMHEEVG LGLMEEPEPE ENNTSNGNKS 360 GFSNWPTPPP WVASTTTPGG PLAEVLMPST VTSTNDGAAA TSNSNLSSPA TTMVSSPSGV 420 LHKTLASLSD SSSNSSPRVP SSGANSEIAL LRFNQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.D1DYZ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015944680.1 | 0.0 | growth-regulating factor 1 | ||||
TrEMBL | A0A445B6F5 | 0.0 | A0A445B6F5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA04G40880.2 | 1e-142 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 2e-34 | growth-regulating factor 7 |