PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.D0JN5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 371aa MW: 41374.1 Da PI: 6.8354 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.9 | 1.5e-20 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+d++k++G g+W+t +++ g++R++k+c++rw +yl Aradu.D0JN5 16 KGPWTPEEDEKLIDYIKKHGHGSWRTLSKRAGLNRCGKSCRLRWANYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.5e-18 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+ ++v+++ +lG++ W++Ia++++ gRt++++k++w+++ Aradu.D0JN5 69 RGKFTPDEERIIVNLHSLLGNK-WSKIASHLP-GRTDNEIKNFWNTH 113 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.243 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-33 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-17 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-18 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.52E-14 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 27.974 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-17 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-27 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.23E-13 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MGRSPCCDES SGNVKKGPWT PEEDEKLIDY IKKHGHGSWR TLSKRAGLNR CGKSCRLRWA 60 NYLRPDIKRG KFTPDEERII VNLHSLLGNK WSKIASHLPG RTDNEIKNFW NTHIRKKLLQ 120 MGIDPDTHKP RTDFNHLINL THLLAAAMSS NSGNPMMNMN TPTWGRNPNI ALQGDVTSQL 180 SQLHLLQNLL QIMNSNTFVN LGNNPNFPLG NPSFNNSYLN GSNILQTVEP FAGLKSEEYG 240 SQSNPTTGLL SQSDYSSDFF QHGLSTNTQE LECYNKLSNT TNQAEINPLF PALVASSPVI 300 TDGTCSSFNQ MENKNSSCCN TAPTSTAQSP NNNSNTIFDD LEKLLQDDET SASYWKDILD 360 LTSICASENS W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 16 | 118 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00438 | DAP | Transfer from AT4G17785 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.D0JN5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015963118.1 | 0.0 | transcription factor MYB39-like | ||||
TrEMBL | A0A444WVM7 | 0.0 | A0A444WVM7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G33870.1 | 1e-137 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 8e-80 | myb domain protein 107 |