PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.CZ5TY
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 555aa    MW: 60786.6 Da    PI: 8.5226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.CZ5TYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C+k F r  nL+ H r H
  Aradu.CZ5TY  6 FICEVCNKGFQREQNLQLHRRGH 28
                 89*******************88 PP
2zf-C2H2120.0006682104123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H +t+
  Aradu.CZ5TY  82 WKCDKCSKKYAVQSDWKAHSKTC 104
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-7528No hitNo description
PfamPF121712.7E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.99628IPR007087Zinc finger, C2H2
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-777102No hitNo description
SMARTSM0035515082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTNK EPKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSSG  120
GGMAGRETAD TRDSFITHRA FCDALAQESA RHPNGTMNPL GGTHLYATNT NHMTLGLSQL  180
GTQISQFQNH QSGATHGSGG GGILRLGSAG AAKFEHLIPP LSHQSSSFGH SPQSSLTNPS  240
PFFINDPNQA FEDNNQTHQQ GSLFSSKQLH GLMQLPDLQG NTTNTNSNNS SNLFNLSFFP  300
NNNNSSGTII PDQFNSNQQG TTTSTLYGDQ VGSGLSSLFG NSSSLQHENV SPHMSATALL  360
QKAAQMGPTT TTNNNNGSSI LRGMCSSSSN KSERELVVSD HVAFGSDQRR SSMENDHHHQ  420
QHLHGLMNSI ASNVGNTTTS SIFDNVHQGN DDNNNNLSHH HHHHHHHQFH QSLEDSSNTN  480
KLPQNHLGVS FGGSDKLTLD FLGVGGMVRN INTGATTHAF SQTHREQQQQ GMMSTLSSLD  540
SDLKSAQSAT PSHRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-2978151364Zinc finger protein JACKDAW
5b3h_F1e-2978151364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.CZ5TY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097921e-114AP009792.1 Lotus japonicus genomic DNA, clone: LjT42M11, TM2098, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942750.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_015942751.10.0protein indeterminate-domain 4, chloroplastic
TrEMBLA0A445BCN00.0A0A445BCN0_ARAHY; Uncharacterized protein
STRINGGLYMA20G32480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.16e-84indeterminate(ID)-domain 5