PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.CST5R
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 534aa    MW: 57720.8 Da    PI: 7.4298
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.CST5RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.37.6e-34243300260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+ +Cpvkkkver+  d++++ei+Y+g+Hnhek
  Aradu.CST5R 243 DDGYNWRKYGQKQVKGSEFPRSYYKCTHLNCPVKKKVERAP-DGHITEIIYKGQHNHEK 300
                  8****************************************.***************85 PP
2WRKY107.28.4e-34420478159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  Aradu.CST5R 420 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASSDPKAVITTYEGKHNHD 478
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-30230302IPR003657WRKY domain
SuperFamilySSF1182902.35E-26240301IPR003657WRKY domain
SMARTSM007741.3E-37242300IPR003657WRKY domain
PROSITE profilePS5081123.571243301IPR003657WRKY domain
PfamPF031065.1E-26243299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-37405480IPR003657WRKY domain
SuperFamilySSF1182901.03E-29412480IPR003657WRKY domain
PROSITE profilePS5081139.226415480IPR003657WRKY domain
SMARTSM007744.8E-40420479IPR003657WRKY domain
PfamPF031061.7E-26421478IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSTTDANSAA APPQSSRPTI TLPPRPSAEA FFSGAGAGIS PGPMTLVSSF FSDGGGSDSD  60
YRSFSQLLAG AMASPLAFGG ASRPPFPPPE NPGENSGEEG AQKSLGFKQS RPMNLVVARS  120
PMFTIPPGLS PSGFLNSPGF FSPQSPFGMS HQQALAQVTA QAVFAQSQMH MQADYQAPAV  180
TAPTAPANPS VEQPSFTQNE ASQQQVVPSV SEPSNAQVET SDISNTDNKK FQPSSMVIDK  240
PADDGYNWRK YGQKQVKGSE FPRSYYKCTH LNCPVKKKVE RAPDGHITEI IYKGQHNHEK  300
PQANRRVKEN NDSNGNSNVP PKSELNSQGW VGNATKVAES IPDCSVPESD QTSNQGASRL  360
PGSSESEEVG NVDNREEGDD GEPNPKRRNT DVAVSEVPLS QKTVTEPKII VQTRSEVDLL  420
DDGYRWRKYG QKVVKGNPHP RSYYKCTSAG CNVRKHVERA SSDPKAVITT YEGKHNHDVP  480
AARSSSHNTA SNNSVPLKPH NPVPQKHPLL KDMDFGSNDQ RPVHLRLKEE QIIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-40243481878Probable WRKY transcription factor 4
2lex_A4e-40243481878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.CST5R
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015962734.10.0probable WRKY transcription factor 4
RefseqXP_025696704.10.0probable WRKY transcription factor 4
SwissprotQ9ZQ701e-153WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A444ZPU50.0A0A444ZPU5_ARAHY; Uncharacterized protein
STRINGXP_007139560.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-127WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]