PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 318aa MW: 35931.1 Da PI: 8.3743

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.CMZ60	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.2e-05	147	166	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Aradu.CMZ60 147 FSCPLCFKTFNRYNNMQMHM 166 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.66	147	174	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.6E-5	147	166	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	149	169	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.8E-5	213	251	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.6E-4	218	251	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MTNNPYYLNN NGYWFDLNSP SSTYVFGSNH ESPPRREALP LLNKLSPSRS TSSRPQDLES 60 SFGAMEVKEK HKRGDDGDES VTVALHLGLP ETRSKNMTCE EEVSAASVSQ EQEEGGGGGR 120 GSDSNSMNRG QYWIPTPAQI LIGPTQFSCP LCFKTFNRYN NMQMHMWGHG SQYRKGPESL 180 RGTQPTAMLR LPCYCCAPGC KNNIDHPRAK PLKDFRTLQT HYKRKHGIKP FMCRKCCKAF 240 AVRGDWRTHE KNCGKLWYCS CGSDFKHKRS LKDHIKAFGN GHKAYGIDSL DQDDNEPGSE 300 IDQENDHLSN STTHHHHT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.CMZ60

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015935383.2	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-127	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A445BV94	0.0	A0A445BV94_ARAHY; Uncharacterized protein
STRING	AES67694	1e-147	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-124	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]