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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Aradu.C2FSZ |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
| Family |
MYB |
| Protein Properties |
Length: 269aa MW: 30947.8 Da PI: 6.0979 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aradu.C2FSZ | genome | NCGR_PGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 46.3 | 1e-14 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l ++ G g+W +ar g+ R++k+c++rw +yl
Aradu.C2FSZ 20 KGLWSPEEDEKLMRYMMNNGQGCWGEVARNAGLQRCGKSCRLRWINYL 67
678*******************************************97 PP
|
| 2 | Myb_DNA-binding | 49.7 | 8.4e-16 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++++E++l+++++ +lG++ W+ Ia+ ++ gRt++++k++w++
Aradu.C2FSZ 73 RGAFSPQEQQLIIHLHSLLGNR-WSQIAAQLP-GRTDNEIKNFWNS 116
89********************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MMSKDKEEEK KNKSKNKLRK GLWSPEEDEK LMRYMMNNGQ GCWGEVARNA GLQRCGKSCR 60
LRWINYLRPD LKRGAFSPQE QQLIIHLHSL LGNRWSQIAA QLPGRTDNEI KNFWNSTIKK 120
RCITITSSST SQNTSESYSS WLEPHDHHNN MEGFTMMPMF SCSSSQSPSI IIDEHLPMPM 180
ENNNMHAAMG IDKGYFNNNN NNNNNNNMFV PPLLESATTS NVYFDEDVNT LHNKVVSVEE 240
DSLISMEDWE LEDLMIKSVS SPFLDFPLS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}. |
