PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C18TC
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 482aa    MW: 54883.5 Da    PI: 7.2495
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C18TCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.82e-19153246189
         FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  ++YneY++  G svr+sk  ++     +gei+++ fvCs+eg+r+ ++ + ++++  +++ tr+gC+a++kv+ ++   +w v++l  +HnH++
  Aradu.C18TC 153 DYYNEYGRIKGISVRRSKVGHRtkqGAEGEIIWQIFVCSREGERDGKHMQrEDRKMDPQPITRCGCEARIKVHVDDaIRRWFVEQLCDNHNHPM 246
                  69*************997655533367899**************99988845666779*****************999**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-17153247IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.235435471IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAVHDGGERG IERHGSTDRD LAVSRFTIRE ENGSHRATRF TVMVDNADVL FAHCDFLNCD  60
SQMGLWSLAT SFNPILSESM SLRCDADDGM SGKTLPVEKA EVMDSSAADA DIDAEAAVRI  120
VDGIGYFGAI EFSTLTAKDV LMTEFTSLQG AYDYYNEYGR IKGISVRRSK VGHRTKQGAE  180
GEIIWQIFVC SREGERDGKH MQREDRKMDP QPITRCGCEA RIKVHVDDAI RRWFVEQLCD  240
NHNHPMLDAR FKGLSRSHRA VKEGDLHQIN SMRKSGLRVP TIFRAFANQS GGFETVGLED  300
HLYAKKHSWS NAHIRGKFFA GLKTTSRCEA LNMQLGKFIH NGYNLREFVE HFQHYLEFMR  360
RRELVADYKS AYGEPIVKTK LEAIEQLAAT VYTREVFELF REVLILASNV RVVSTKRTST  420
CVLFEVAMYC KQRSWVVSWA EEDDKFSCFC QRMESFGLPC VHMVGVLVYL NMKAIPRSLI  480
LE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.C18TC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015965042.11e-165protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444X0R91e-160A0A444X0R9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-18FAR1-related sequence 5