PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.C0E4H

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 230aa MW: 26492.5 Da PI: 6.2786

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.C0E4H	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.4e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl Aradu.C0E4H 14 RGPWSPEEDTKLKEYIDKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.9E-23	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.971	9	66	IPR017930	Myb domain
SMART	SM00717	2.8E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-16	14	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.53E-19	15	88	IPR009057	Homeodomain-like
CDD	cd00167	1.20E-8	16	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-6	66	87	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MGRAPCCDKA NVKRGPWSPE EDTKLKEYID KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRIIC SLYANIGSSL PFYQNQQQEQ QQALMSPMQQ YYPMFGSEGS 120 CSSSDGSCSH GGREMKKEEM GFHHHHMFHH HEEQQQQPMV VDDDGINNNN QWTEKLDKWL 180 FQTANPLDYD LEVIKQLVIS SSGNDGLFSV DENKTVQESK PIIYNYKYSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.C0E4H

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094587	5e-81	BT094587.1 Soybean clone JCVI-FLGm-18J14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015935809.2	1e-102	uncharacterized protein LOC107461760
TrEMBL	A0A445BW29	6e-64	A0A445BW29_ARAHY; Uncharacterized protein
STRING	GLYMA13G39760.1	2e-56	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	6e-54	MYB family protein