PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.B7RDX | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 29224 Da PI: 4.6087 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.3e-13 | 55 | 97 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ +K++Ka+i + A++YI +L Aradu.B7RDX 55 VSERNRRKKLNERLFALRAVVPNI-----TKMDKASIIKDAIDYIEHL 97 57*********************7.....7*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.145 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-17 | 50 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.67E-13 | 52 | 102 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 54 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-15 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-11 | 55 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MEDCEDYKNY WETNMFLQTQ ELDSWQLDEA FSGGYYDSSS PDGGASSAAS NKNIVSERNR 60 RKKLNERLFA LRAVVPNITK MDKASIIKDA IDYIEHLHEQ EKRIQDEIME LESEKLKNPI 120 IAAAGDYDFE QDLPVLLRSK KKRPDNLLFD TSASSSSRNN INYFPIELID LRVTYKGEKI 180 FVVSLTCSKR TDTMVKLCEV FESLKLKIIT ANITSFSGTL SETLFVEADE EEKDHLQIRI 240 QTAIAALNDP QSPMSI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 53 | 117 | 9 | 66 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 53 | 117 | 9 | 66 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 53 | 117 | 9 | 66 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 53 | 117 | 9 | 66 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 53 | 117 | 9 | 66 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 53 | 117 | 9 | 66 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 53 | 117 | 9 | 66 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 53 | 117 | 9 | 66 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.B7RDX |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015973120.1 | 0.0 | transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 2e-88 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A445AUT4 | 1e-161 | A0A445AUT4_ARAHY; Uncharacterized protein | ||||
STRING | XP_004487998.1 | 1e-126 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57150.1 | 1e-79 | bHLH family protein |