PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HD-ZIP

Protein Properties

Length: 199aa MW: 22716.9 Da PI: 4.4621

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.B7BPA	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.3	5.3e-08	24	39	41	56
HHHHHHHHHHHHHHHH CS Homeobox 41 erqVkvWFqNrRakek 56 rqV +WFqNrRa++k Aradu.B7BPA 24 PRQVAIWFQNRRARWK 39 59*************9 PP
2	HD-ZIP_I/II	73.5	4e-24	21	77	37	93
HD-ZIP_I/II 37 glqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + prqva+WFqnrRAR+ktkqlEkdy++L++++d+lk++ ++L ke+++L++e+++ Aradu.B7BPA 21 DEAPRQVAIWFQNRRARWKTKQLEKDYDSLQATFDTLKANYDNLLKEKDRLKAEVAR 77 557*************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.718	17	41	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.49E-7	23	50	IPR009057	Homeodomain-like
CDD	cd00086	9.24E-6	24	42	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.8E-9	24	49	IPR009057	Homeodomain-like
Pfam	PF00046	2.3E-5	25	39	IPR001356	Homeobox domain
Pfam	PF02183	2.4E-17	41	82	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MVSFEDVPGG KGEQAGAREE DEAPRQVAIW FQNRRARWKT KQLEKDYDSL QATFDTLKAN 60 YDNLLKEKDR LKAEVARLTE KVVAREKEGE DKSERKGMQE ATAAAVSSEG EGSKISVKSD 120 MLDSDDNINS PYYHTTSGMF EADQSDLSQD EEENLINRSL LHPYLIFPKL EHVEYSDPPE 180 TSCNFGFAHE DHAIWSWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	41	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.B7BPA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016192695.1	1e-127	homeobox-leucine zipper protein HAT5
Refseq	XP_025618663.1	1e-127	homeobox-leucine zipper protein HAT5
Refseq	XP_025629253.1	1e-127	homeobox-leucine zipper protein HAT5
Swissprot	Q02283	2e-23	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A445B023	1e-126	A0A445B023_ARAHY; Uncharacterized protein
TrEMBL	A0A445EJH8	1e-126	A0A445EJH8_ARAHY; Uncharacterized protein
STRING	GLYMA06G20230.1	2e-65	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	7e-26	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]