PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.B6WSD
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 626aa    MW: 70062.8 Da    PI: 6.7299
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.B6WSDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.87.1e-29165250187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l L+e+r+++++++r++++k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Aradu.B6WSD 165 RWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQLEA 250
                  8*************************************7778*****************************8..55667*******85 PP
2trihelix34.55.3e-11502591170
     trihelix   1 rWtkqevlaLiearremeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                  rW++ e+  Li++r+  eer+r+++                         Wee+s k+   gfers+++Ck+ w++++    ++++++  
  Aradu.B6WSD 502 RWSEMEISNLIQLRTGFEERMRENNnnnggggyyfesnnnnnnnnGVSSVWEEISGKLGCLGFERSSEECKQIWDEISISLGRTNTSAAA 591
                  8*********************9877788888999999999887777899**************************99877777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2162225IPR001005SANT/Myb domain
CDDcd122032.33E-21164230No hitNo description
PROSITE profilePS500906.888164223IPR017877Myb-like domain
PfamPF138371.9E-19164251No hitNo description
PROSITE profilePS500905.738495579IPR017877Myb-like domain
SMARTSM007171.7499581IPR001005SANT/Myb domain
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MADPYGLPED LRRLMSNRPH FTTATAAAPF FPLPENPLSL HHHHHLLNAP PPPPPLNTTY  60
DPIIINNVVG DLFFPRSNNN TTSAAFTAHH HHFPLHHHHH NSTNNSPSSS SLNPTPPPPP  120
PPTTTSVSDH HHHHAFMAAM DTASAAAAAA SMDKGWLAFD TGTNRWPRQE TLSLLEIRSR  180
LDSKFRENNQ KAPLWNEISR IMAEEFGYQR SGKKCKEKFE NLYKYYKKTK EGKASRQDGK  240
HYRFFRQLEA ICGGSGGGSG GSGGDSSNTT HNNNLHALAS NTASASVAGA NVQTPRSFNG  300
DHQNNNSLIK CSESLSFSNS CELETSSSEN NDEDLSAIAY MMKHSTSSRD NNNNKQKGVQ  360
LDDDHHGGRV RRRRSLRAKV EEIVGSHMRK IIETQDAWME RMVSVVEQRE KEMASMEEER  420
KKKESMRFDQ EVTELWAKER AWVEARDAAL IEVVRKHIGN GNNNSNNNKE FEIIEALAPQ  480
SNNKSNKGQT ANNNNNNGGG GRWSEMEISN LIQLRTGFEE RMRENNNNNG GGGYYFESNN  540
NNNNNNGVSS VWEEISGKLG CLGFERSSEE CKQIWDEISI SLGRTNTSAA AAAVAKTNRP  600
WCLELKLTDD DDDDDEHHHD HDDHHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.B6WSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941224e-90BT094122.1 Soybean clone JCVI-FLGm-18O17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941221.10.0trihelix transcription factor PTL-like
TrEMBLA0A444XSK90.0A0A444XSK9_ARAHY; Uncharacterized protein
STRINGXP_007143826.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.15e-57Trihelix family protein