PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.B62EN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 156aa MW: 17869.4 Da PI: 6.5076 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.8 | 3.4e-10 | 9 | 48 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqc 40 +W++ Ed ll d+v+++G g+W+tIa+ + +Rt+kq+ Aradu.B62EN 9 AWSEKEDNLLRDVVQRFGEGHWATIAKGGNfsVKRTAKQI 48 7***************************999999****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.84 | 2 | 60 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-11 | 3 | 55 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.33E-9 | 5 | 50 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-4 | 6 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-8 | 9 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.34E-9 | 10 | 48 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MTSKKRKIAW SEKEDNLLRD VVQRFGEGHW ATIAKGGNFS VKRTAKQIDQ YASECLIQCK 60 ATCMCRRNML LEVAMVARML MWEDEFCQGR SASLVEDMDG GGEDPVRKTF SKMSIQLYNY 120 GEGWLPPEWT DQFDFGIQTI DVIQAGHGLI NYRNSN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.B62EN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020960245.1 | 1e-51 | uncharacterized protein LOC110263389 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.2 | 2e-07 | MYB_related family protein |