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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.B2KP3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 531aa MW: 61498.3 Da PI: 9.8471 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.2 | 8.7e-16 | 22 | 108 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk+vGF ++++ +++ +++ +++ +C++egk +++ + ++t++ + +C a++ ++++k+g ++k+ l+H+H++ Aradu.B2KP3 22 QFYQNYAKRVGFVTKIRFTRRVGKDKVPKNQIITCNREGKCKSRVSL---IEKTNPRINYNCPARISIRLNKEGIRIISKVCLDHSHPCD 108 6*************************9****************9888...899999*******************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.4E-13 | 22 | 108 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MEFKKDVPKV GMCFGTIEDA NQFYQNYAKR VGFVTKIRFT RRVGKDKVPK NQIITCNREG 60 KCKSRVSLIE KTNPRINYNC PARISIRLNK EGIRIISKVC LDHSHPCDPE IAKLLTRNRE 120 MSMHMCRVIE RNDEAGVRPS KTYQVLMGEA RDIYEERHRW VSIFLDNFFW AGMRSTQQTE 180 SMHSYFDKFL NNKSLLIQFK EQQEREADVE DYKSIIPCAT NSLIEKQFQS AYTNAKFKEV 240 QKQIRKKANC ILHLMKAVST SKVYSILEDV SNSKERVYEV NYNAKTKDIT CKCQMFESRG 300 ILCSYSLVVL GNEHVREISR RYILDRWSKL VKRRHSDIKS SHDPSLLNLK TEKFDDLCSH 360 SNNVAQFASQ TKETSDILHR YLDMAMSECQ KHIANSSSNA NELDNLLTLE DGGKDALSIF 420 VGGCIISIQN IKSPPYVSSK GRSTNRLRSE KDKMIKKKTE AKKRKNFRCR NYFLKNNQHI 480 GNSQSLPFNK QLQDANYHVN EGFESDSMGG SIGRFMSLLN SIHSYKFSNV D |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.B2KP3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015933229.1 | 0.0 | uncharacterized protein LOC107459516 | ||||
TrEMBL | A0A444XQD3 | 0.0 | A0A444XQD3_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445B541 | 0.0 | A0A445B541_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 3e-27 | far-red elongated hypocotyls 3 |