PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB

Protein Properties

Length: 260aa MW: 29313.9 Da PI: 6.6145

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.AT974	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l + + G +W+t+++ g++R++k+c++rw +yl Aradu.AT974 14 KGPWTSEEDKKLMNFIMSNGQCCWRTVPKLAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T E++l +d++++lG++ W++Ia++++ gRt++++k++w+++ Aradu.AT974 70 LTHSEEQLVIDLHARLGNR-WSKIASRLP-GRTDNEIKNHWNTH 111 5899*************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-22	5	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.297	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.87E-27	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	9.86E-8	16	61	No hit	No description
PROSITE profile	PS51294	26.762	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-24	64	116	IPR009057	Homeodomain-like
SMART	SM00717	8.6E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	7.9E-15	70	111	IPR001005	SANT/Myb domain
CDD	cd00167	7.81E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MGRQPCCDKV GVKKGPWTSE EDKKLMNFIM SNGQCCWRTV PKLAGLKRCG KSCRLRWTNY 60 LRPDLKRGLL THSEEQLVID LHARLGNRWS KIASRLPGRT DNEIKNHWNT HIKKKLLKMG 120 IDPVTHEPLA KQQLVSSSSS SSESAEQLPE PQQQLKETVV NKNDNNGVPV PINSQQENSS 180 SSSPPTENSC SASGDGDESL ILNSLWLDDT PLIDALWDTT PTSWLLDCQD FGIHDFGFNC 240 FNETESNALQ TLETEEKKWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-28	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269\|PubMed:15805488}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.AT974

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015964401.1	0.0	protein ODORANT1
Swissprot	Q50EX6	2e-96	ODO1_PETHY; Protein ODORANT1
TrEMBL	A0A445D9R8	0.0	A0A445D9R8_ARAHY; Uncharacterized protein
STRING	XP_007157323.1	1e-120	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF653	34	142

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	7e-84	myb domain protein 85

Publications ? help Back to Top
Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC ODORANT1 regulates fragrance biosynthesis in petunia flowers. Plant Cell, 2005. 17(5): p. 1612-24 [PMID:15805488]