PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.A9NSU
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 266aa    MW: 31137.8 Da    PI: 4.7724
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.A9NSUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l  +v+++G ++W+  +r  g+ R++k+c++rw +yl
      Aradu.A9NSU 14 KGAWSEEEDKKLTAYVERYGHPNWRQLPRLAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.94.9e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+ E++l+ d++kq+G++ W++Ia+ ++ gRt++++k++w+++l
      Aradu.A9NSU  67 RGNYTQKEEQLIMDLHKQHGNK-WSLIAENLP-GRTDNEIKNYWHSHL 112
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.851961IPR017930Myb domain
SuperFamilySSF466895.75E-3011108IPR009057Homeodomain-like
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
PfamPF002495.6E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-221568IPR009057Homeodomain-like
CDDcd001678.97E-101661No hitNo description
PROSITE profilePS5129426.26562116IPR017930Myb domain
SMARTSM007171.9E-1666114IPR001005SANT/Myb domain
PfamPF002494.2E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2669114IPR009057Homeodomain-like
CDDcd001676.09E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVRAPYFDAN GIKKGAWSEE EDKKLTAYVE RYGHPNWRQL PRLAGLLRCG KSCRLRWMNY  60
LRPNLKRGNY TQKEEQLIMD LHKQHGNKWS LIAENLPGRT DNEIKNYWHS HLKKFQNCNV  120
NNTASDDDDD DLNKSKSKSK SSSQNTKEHE RPKSEVLTIT TVDDNDDDSH HILESSLSNV  180
TTESSYSYTE EEEDNNNNNN NNAWLCFSSG HEEESNREED RFASWGATTL FDEFGSSFWT  240
EPFISDDAFS QDYNYILYDR EDPFFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141147106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.A9NSU
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015953560.10.0transcription factor MYB14-like
SwissprotQ9SJX82e-56MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A445E0H70.0A0A445E0H7_ARAHY; Uncharacterized protein
STRINGGLYMA06G45520.11e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-55myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]