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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.A6WNC | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 163aa MW: 18223.7 Da PI: 7.1617 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.2 | 1.1e-06 | 3 | 38 | 18 | 55 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++ Lr+llP ++ ++K s ++ +Av+YIk++q Aradu.A6WNC 3 TLYSSLRSLLPLQF--IKGKRSISDHMNEAVNYIKYMQ 38 6799********65..********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.197 | 1 | 37 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-6 | 3 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-5 | 4 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MATLYSSLRS LLPLQFIKGK RSISDHMNEA VNYIKYMQNN IKELGAKRDE LKKKKKLSNY 60 YHHHDNNDKP TSSTNRYFTL HESDNGVLGI EITGGAAAAA GEEEGVTLSE ILGLLVEEEG 120 LEVLSYLSSK VNGRLVHSVQ CEVVNSNSVD LFELRRKLAS LIQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 56 | LKKKKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.A6WNC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015967518.1 | 1e-115 | transcription factor bHLH118 | ||||
Refseq | XP_025701887.1 | 1e-115 | transcription factor bHLH118 | ||||
TrEMBL | A0A445CZM0 | 1e-114 | A0A445CZM0_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA16G32620.1 | 3e-55 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 4e-21 | bHLH family protein |