![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.9Q4WD | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 527aa MW: 57544.3 Da PI: 5.9204 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.4 | 1e-17 | 59 | 145 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.9Q4WD 59 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 145 6***************998776..8889*************998877...8999**************998879***************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.7E-15 | 59 | 145 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 527 aa Download sequence Send to blast |
MDHSTSDCQL NPGEVNYEFE SNEVPEVYYI RHDWPLSVVD DELVPKVGMT FTILEDAEKF 60 YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREGKWKSK ISPTEKTNPT AGLNCPARIY 120 IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNEE AALWVEKILQ 180 ELKVSISPIE GRIALPIILP RTSSSSTLRP ARNWNILPSS TRLVTEDRGG AIVHSARGDP 240 AVPETVGAFT GALEGEALSD GAGGHDDGIG HEGFGISENG KRTLREIYLR DGLREDLGAE 300 SLRLLAAAFH ELTAEDAVRE AGEVLDVGCR GELASGGDVV GHPSFEEDWF ELGASGVDGG 360 SVGGRTASYD AELGFEGAHE YAAALAVVVE AWRRTVTTSP GTARLFSSSN NTIIASEAGS 420 KQRESDAADF HTVIPCSTKS SIEAQFQDAY THAKFREVQA QFRGKANCIT RLKNSALGYS 480 IYDVGEQVSS SIFNKFAVTY DSVTAERDTV PSRTKRVKLR TSKPSVS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.9Q4WD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 1e-176 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A444ZXU6 | 1e-116 | A0A444ZXU6_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445A2R8 | 1e-116 | A0A445A2R8_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07500.1 | 6e-10 | FAR1 family protein |