PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.9H0MY | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Trihelix | ||||||||
Protein Properties | Length: 705aa MW: 77008.7 Da PI: 6.2372 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.7 | 4.3e-25 | 88 | 210 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......................................rergferspkqCkekwenlnkr 60 rW++qe+laL+++r++m+ ++r+++ k+plWeevs++ +e g++r++k+Ckek+en+ k+ Aradu.9H0MY 88 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSSYSlisnvvygyslsyasipsilalvnlgglilmnelirklAELGYKRNAKKCKEKFENVYKY 185 8************************************************************************************************* PP trihelix 61 ykkikegekkrtsessstcpyfdqlea 87 +k++k+g++++++++ t+++fdqlea Aradu.9H0MY 186 HKRTKDGRSGKSEGK--TYRFFDQLEA 210 *********975544..6*******85 PP | |||||||
2 | trihelix | 106.2 | 2.2e-33 | 525 | 610 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s+ m+++g++r++k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+a Aradu.9H0MY 525 RWPKAEVEALINLRTSLDAKYQENGPKGPLWEEISALMKKHGYNRNAKRCKEKWENINKYFKKVKESNKKR-PQDSKTCPYFHQLDA 610 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 47 | 85 | 185 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 3.95 | 87 | 183 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.59E-18 | 87 | 190 | No hit | No description |
Pfam | PF13837 | 3.9E-8 | 159 | 211 | No hit | No description |
SuperFamily | SSF101447 | 8.11E-6 | 457 | 466 | No hit | No description |
SMART | SM00717 | 4.6E-4 | 522 | 584 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 7.2E-23 | 524 | 611 | No hit | No description |
CDD | cd12203 | 3.87E-29 | 524 | 589 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-5 | 524 | 581 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.317 | 524 | 582 | IPR017877 | Myb-like domain |
SuperFamily | SSF101447 | 8.11E-6 | 541 | 588 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MLGDSAVLGT GGGSSGGADA VVATAATSSA AAAVATASAP LPPPQSVSAA PHHHHDGTAE 60 MVGGGGGGGG GSTSGDDEKG ERSFGGNRWP RQETLALLKI RSDMDVAFRD ASVKGPLWEE 120 VSSYSLISNV VYGYSLSYAS IPSILALVNL GGLILMNELI RKLAELGYKR NAKKCKEKFE 180 NVYKYHKRTK DGRSGKSEGK TYRFFDQLEA LENNPIIHSP AIPQKSALQA TPVSMVKTTA 240 SLPSPPIITT MPQQQQVVVA SSGTNTTSAP PISIATVPSI APTTISMPQI QPNNSNNNNN 300 NNNSSNNNNP VYFPPPPPPP PASSFPSIPA ELLSNSSSSS TSSEETIEGG SRRNKRKRRW 360 KEFFEKLMKE VIEKQEDLQK RFLEAIEKRE KERSAREEAW RVQELQRINK EREILAQERS 420 IAAAKDQAVM TFLHKIADQQ NLPTPPFNNV SQPSPPPPPP PPPPPPPQQT QPTPPVVVPP 480 LPTPPRPPPS MEMVKVVDNN NNNNGENNNN NNNNNSSPLA ASSSRWPKAE VEALINLRTS 540 LDAKYQENGP KGPLWEEISA LMKKHGYNRN AKRCKEKWEN INKYFKKVKE SNKKRPQDSK 600 TCPYFHQLDA LYRERNSGKH DAAPAIVTTT PLMVRPEQQW PPQTDQPSSQ PREVTMEDAR 660 KGGNDEDEDE EKDNIGDEDD DEDDDDDDEG GSNFEIVASK PVSAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 176 | KRNAKKCKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.9H0MY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015968000.1 | 0.0 | trihelix transcription factor GT-2 | ||||
TrEMBL | A0A445CYI4 | 0.0 | A0A445CYI4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA16G28250.2 | 1e-178 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 6e-57 | Trihelix family protein |