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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.9C8PR | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 447aa MW: 48652.6 Da PI: 4.5356 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.8 | 1.2e-05 | 329 | 366 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Aradu.9C8PR 329 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 366 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.973 | 317 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-11 | 327 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.03E-5 | 327 | 370 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.4E-9 | 331 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MAEEFQATIC GDNYWWNSNK SLFSLMGGSM TCSVAAANDS ANNYDSFWQG SDFMDFKGAT 60 TKSSFKGEDT NKCSNNESST SASAVAGGTV GSIFINSTSQ MMSDGLSSSP SFTWNNPSLF 120 GCNERSENNF QSIVIQEETG LDPSNNNSQQ IQQQQEFSNS MGSGFTIESS LSASYDYPLM 180 QAGLFGSTDS SSSLFTTNQP TLPELSPIWS TVSSFMKPSS FMEPKQLNGL QFSNNTPFCN 240 ASTEETLYSI RSDIFSSSSS QPQLYQTPPT TFDNSKPNNA LTSTPLNKLK REESPEKASS 300 SVCSKNVSGR VFKKTRIETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHEAI 360 EYIKFLHDQV NVLTAPYMKN GSSIQDQQGC DYEKDSKCLT QDLNSRGLCL VPVASTFPMA 420 TETTADFWTP TFGNSLIGNV AVAGSHQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.9C8PR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015943476.1 | 0.0 | transcription factor bHLH112 | ||||
TrEMBL | A0A445BB19 | 0.0 | A0A445BB19_ARAHY; Uncharacterized protein | ||||
STRING | XP_007148280.1 | 1e-118 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 4e-50 | bHLH family protein |