PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.95Z4F
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23192.7 Da    PI: 10.1565
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.95Z4FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.61.9e-293080151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+ +qvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  Aradu.95Z4F 30 KRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSS 80
                 79***********************************************96 PP
2K-box59.31.6e-20801363389
        K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                  +e R+++G+dL++Lsl+eLq+LeqqL+ slk+iR +Kn+++ ++i+el k++k+ ++
  Aradu.95Z4F  80 SESRNFVGNDLDPLSLRELQSLEQQLDASLKRIRIRKNQVMNQSISELNKRMKDKEK 136
                  678************************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-382281IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.2582282IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-282386IPR002100Transcription factor, MADS-box
CDDcd002656.03E-352382No hitNo description
PRINTSPR004047.3E-302444IPR002100Transcription factor, MADS-box
PfamPF003191.6E-243178IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-304459IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-305980IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.78161150IPR002487Transcription factor, K-box
PfamPF014861.4E-1678136IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRARDIINNK KKNSDCEKEG KMGRGRVQLK RIENKTSQQV TFSKRRTGLL KKAHEISVLC  60
DAQVALIMFS TKGKLFEYSS ESRNFVGNDL DPLSLRELQS LEQQLDASLK RIRIRKNQVM  120
NQSISELNKR MKDKEKTMSE GPQVCLETLG KSTPNINLSS QDHLPPQRLV PCLNLSGTIL  180
EETAEAQDGA GGSTVIPPWM LQHLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-182296168MEF2C
5f28_B2e-182296168MEF2C
5f28_C2e-182296168MEF2C
5f28_D2e-182296168MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.95Z4F
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985711e-59BT098571.1 Soybean clone JCVI-FLGm-16N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020996850.11e-122truncated transcription factor CAULIFLOWER A
SwissprotD7SMN68e-53FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A444WN021e-118A0A444WN02_ARAHY; Uncharacterized protein
STRINGAES777393e-78(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.17e-39AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]