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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.94QSA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 94aa MW: 10592.9 Da PI: 10.0235 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.6 | 4.7e-08 | 24 | 60 | 18 | 54 |
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + ++Lr+l+P+ + + +s K+s + +L+++++YIk+L Aradu.94QSA 24 QLVSKLRQLVPEiR-NRRSDKVSASKVLQETCNYIKNL 60 55689*******77.89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.934 | 6 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-8 | 22 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-5 | 24 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-9 | 24 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MSSGSRSSRQ RSHSTRISDD QIIQLVSKLR QLVPEIRNRR SDKVSASKVL QETCNYIKNL 60 HREVDDLSER LGQLLSTIDA DSAEAAIIRS LLSN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 39 | RQLVPEIRNRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.94QSA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015962412.1 | 8e-60 | transcription factor PRE6-like | ||||
Refseq | XP_016196793.1 | 8e-60 | transcription factor PRE6-like | ||||
Refseq | XP_020996792.1 | 8e-60 | transcription factor PRE6-like | ||||
Refseq | XP_025649918.1 | 8e-60 | transcription factor PRE6 | ||||
Swissprot | Q9LJX1 | 2e-38 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A444ZQ30 | 2e-58 | A0A444ZQ30_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G37370.1 | 3e-46 | (Glycine max) | ||||
STRING | GLYMA18G49320.1 | 3e-46 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF567 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 7e-37 | bHLH family protein |