PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.94Q3I
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 285aa    MW: 33122.7 Da    PI: 9.9297
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.94Q3IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.12.2e-1138100163
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCk 63 
                  +fY++ +k  GF +r+  + k  ++g+ ++r+f C++eg+r++++ +  +++r  ++etrt+C+
  Aradu.94Q3I  38 EFYKKLGKLYGFGIRRGDMFKD-EKGNLVRRRFFCNREGQRDKKHYNrIDRKRPYKPETRTNCE 100
                  6*****************9998.7777****************9998566777799*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-938100IPR004330FAR1 DNA binding domain
SuperFamilySSF577565.23E-6186220IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.109.0E-5196216IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MCDDGVGVTG AVDFGDVADI KENDILRKVF RSEDDAYEFY KKLGKLYGFG IRRGDMFKDE  60
KGNLVRRRFF CNREGQRDKK HYNRIDRKRP YKPETRTNCE NLELLVWEYM NNELLAQFRS  120
IYSEPVLTTS LDSLERHAAS LYTRAVFGDV KREIEIVSSV NFVGVPSRLG YSLLLWRGFA  180
DYVQPWRAPR RHKKKVSKRK CAKCNKLGHT KRTCTDGRPR RGKGARLDRL DSDEDDGQNT  240
VDKSHSKPVT VLVQINRFWN YSTTCLNWCR CVKLSFEGST QPHVG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.94Q3I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020981435.18e-56protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020989561.11e-55protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025609952.11e-55protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A445EEK91e-62A0A445EEK9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15343210