PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.91DIX
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 386aa    MW: 45439.3 Da    PI: 6.9669
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.91DIXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.77.8e-1881171190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fY++YA+   F  r +++ +   +g+  +r++vC++eg+++++  + +++++ +++ tr+ C+ak++ + +   +kw+vtk+e+ HnH+l 
  Aradu.91DIX  81 DFYRNYAEVHDFVARLDEKGQD-FSGNLNMRQMVCNREGTHRKKYLEmENRKKDHKPITRVMCQAKIRFHYDLiLQKWRVTKFEETHNHDLI 171
                  6************999987776.9999*************99998885677778999***************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-1581172IPR004330FAR1 DNA binding domain
SuperFamilySSF577569.63E-5318346IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNIDDNKNLK ESIECNELCF GYDNSSDKEE EDLITNEGKF SESMEMSNYS YKIQEVEKKL  60
NELSYDDMWG IEFDNVDQCC DFYRNYAEVH DFVARLDEKG QDFSGNLNMR QMVCNREGTH  120
RKKYLEMENR KKDHKPITRV MCQAKIRFHY DLILQKWRVT KFEETHNHDL IPPKYIQFVP  180
AYRTMTDADK AQADSLHFYG YRTNELLSDF KSLFTTPVLT TCLQDIEKQA ADIFTRSMFK  240
EVRCEIEEAG KLNVVTHSVS NNEVKSASKN RDDFMEIRDD IFGLIQKLKK RRDPDSNVLS  300
NACMVGDPTV VKTKGVLRQN RWAIKSRKCS HCIRRGHTIR RCPELYSRDV LHTGHHQSSD  360
ELNDEKDTRV DDTSLKSKKY KQIKVF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.91DIX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015961394.11e-143protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445CDV21e-137A0A445CDV2_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2354823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.16e-15FAR1-related sequence 11