PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.8U0A6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 37213 Da PI: 5.6443 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.7e-08 | 201 | 245 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR++i ++ +eL +l+P K++ ae+L A +Y+k+Lq Aradu.8U0A6 201 SIAARERRRKITDKTQELGKLVPGG-----SKMNTAEMLHAASKYVKYLQ 245 67889******************95.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.64E-12 | 193 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.551 | 195 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-11 | 197 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.52E-7 | 198 | 248 | No hit | No description |
SMART | SM00353 | 2.8E-9 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-6 | 201 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MALNTYVNGD ALQNSIISEI FTTNFHELTA PKELTPDYYY HQHNQEGLFP NNFFFDPYFD 60 LNNGFFHPEI LSYHQLGLSC TSSHDLFISP NKTEYSNVNT IFSSPKRQKY FHKDEDEERQ 120 LPPPFKEYSS PNLFDGFTMN SSSLLPSEGA ALPEELLLPA AVATPSSDFM VPNVVLNSFC 180 VGINNDSKKK KNSERTISAQ SIAARERRRK ITDKTQELGK LVPGGSKMNT AEMLHAASKY 240 VKYLQTQIGM LQLMNTLQKE DEVAPPSEDL RALITSPCVQ ENLYSEELCF VPKDFVTALT 300 NQRDIRSKPT IFKDLKELIE TNNVQKKA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 188 | 209 | KKKNSERTISAQSIAARERRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.8U0A6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935328.1 | 0.0 | transcription factor bHLH52-like | ||||
TrEMBL | A0A444Y8N0 | 0.0 | A0A444Y8N0_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3459 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 6e-33 | bHLH family protein |