PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.8PM8C

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SBP

Protein Properties

Length: 1109aa MW: 121995 Da PI: 7.2349

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.8PM8C	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.3	5.8e-40	162	239	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ Aradu.8PM8C 162 VCQVQDCRVDLSGAKDYHRRHKVCDVHSKATKALVGNVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNRRRRKTHP 239 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.4E-31	157	224	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.787	160	237	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.36E-37	161	241	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.9E-29	163	236	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.8E-7	889	993	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.82E-8	892	991	No hit	No description
Gene3D	G3DSA:1.25.40.20	4.9E-6	892	992	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1109 aa Download sequence Send to blast
MEARFGGKNQ FLYGAVVPEM KGVGKRSLEW DLNDWRWDGD LFTAQQLNSV PSDCRSRQFF 60 PPNPEIHANN NAINASNSIS SSINPVEEGK RELEKKRRAV VIGEGEEREE LNDEGGGGGG 120 GGSSLNLNLG AQVYPIMVEG DEKSGKKTKV VETAATTSNR AVCQVQDCRV DLSGAKDYHR 180 RHKVCDVHSK ATKALVGNVM QRFCQQCSRF HALEEFDEGK RSCRRRLAGH NRRRRKTHPD 240 AAGVNGGSLN GERGSSYLLM SLLRILSNMH LCCETGSSYD QASYLYSLSV LRREDSLECR 300 KIVWARGASH LVFDISSNQI EMIRNMQVSD QNVLICYVSA VETSFMPPNG SDNTRNQDIL 360 SHLLGNLANL AGTLNERSIA SLLEGSQGLV NSRTPEAALN VPNLNSNGPE ASRPSGSPIK 420 TGNGAIRQDP PRSMVQCEAA PLNAVTEKCV PLSHGAVAKL KPSGIQPSSN VLLSRDSQPS 480 QLIAADTSVG RDHLNNIDLN NVYDDTQDCA ENPKSSSAPV GEVRSLDHPL WLQCNSLKSS 540 PPQTSINSDS TSTQSPSSSS GEAQSRTDRI VFKLFGKDPS DFPHVLRSQI LNWLSHSPTE 600 IESYIRPGCI VLTIYLRLEK SAWEELSCNL GSSLSKLASN DSFWTTGWVY TRVQQSVAFL 660 YNGQVVLDAP LHLRSPQNCR ISCIKPLAVP KNANAKFTVK GFNLFRSSTR MLCAFEGKYL 720 VHDSSHDLID VADVSDAAIQ HLSFSCQIPN VTGRGFVEVE DHGLSSCSFP FIVAEQEICT 780 EICKLENVIE AADATDDVLL KSKQIEEKTR ALEFLQEMGW LLHRSRLNVR LGTLAPTQDP 840 FHFSRFVWLV DFSMDHDWCA VVKKLLDIIF EDGVDVGDHT SIELALLDMG LLHKAVKRNS 900 RPMVELLLKF VPTKSSAGAA KFLFRPDNVG PAGLTPLHVA ASMKGSENVL DALTDDPGMV 960 GIEAWKSARD NTGLTPNDYA SLRGYFSYIQ LVQKNTNKRR EGQHVLDIPG AIVDSNTKQK 1020 QLDVNRTSKL ASLHTEKLET TVMASQCGIC QHRLAYGGTR AALVYRPAML SLVAIAAVCV 1080 CVALLFKSSP KVYYVFQPFN WESLGYGYI

Sequence ? help Back to Top

Protein Sequence Length: 1109 aa Download sequence Send to blast

MEARFGGKNQ FLYGAVVPEM KGVGKRSLEW DLNDWRWDGD LFTAQQLNSV PSDCRSRQFF  60
PPNPEIHANN NAINASNSIS SSINPVEEGK RELEKKRRAV VIGEGEEREE LNDEGGGGGG  120
GGSSLNLNLG AQVYPIMVEG DEKSGKKTKV VETAATTSNR AVCQVQDCRV DLSGAKDYHR  180
RHKVCDVHSK ATKALVGNVM QRFCQQCSRF HALEEFDEGK RSCRRRLAGH NRRRRKTHPD  240
AAGVNGGSLN GERGSSYLLM SLLRILSNMH LCCETGSSYD QASYLYSLSV LRREDSLECR  300
KIVWARGASH LVFDISSNQI EMIRNMQVSD QNVLICYVSA VETSFMPPNG SDNTRNQDIL  360
SHLLGNLANL AGTLNERSIA SLLEGSQGLV NSRTPEAALN VPNLNSNGPE ASRPSGSPIK  420
TGNGAIRQDP PRSMVQCEAA PLNAVTEKCV PLSHGAVAKL KPSGIQPSSN VLLSRDSQPS  480
QLIAADTSVG RDHLNNIDLN NVYDDTQDCA ENPKSSSAPV GEVRSLDHPL WLQCNSLKSS  540
PPQTSINSDS TSTQSPSSSS GEAQSRTDRI VFKLFGKDPS DFPHVLRSQI LNWLSHSPTE  600
IESYIRPGCI VLTIYLRLEK SAWEELSCNL GSSLSKLASN DSFWTTGWVY TRVQQSVAFL  660
YNGQVVLDAP LHLRSPQNCR ISCIKPLAVP KNANAKFTVK GFNLFRSSTR MLCAFEGKYL  720
VHDSSHDLID VADVSDAAIQ HLSFSCQIPN VTGRGFVEVE DHGLSSCSFP FIVAEQEICT  780
EICKLENVIE AADATDDVLL KSKQIEEKTR ALEFLQEMGW LLHRSRLNVR LGTLAPTQDP  840
FHFSRFVWLV DFSMDHDWCA VVKKLLDIIF EDGVDVGDHT SIELALLDMG LLHKAVKRNS  900
RPMVELLLKF VPTKSSAGAA KFLFRPDNVG PAGLTPLHVA ASMKGSENVL DALTDDPGMV  960
GIEAWKSARD NTGLTPNDYA SLRGYFSYIQ LVQKNTNKRR EGQHVLDIPG AIVDSNTKQK  1020
QLDVNRTSKL ASLHTEKLET TVMASQCGIC QHRLAYGGTR AALVYRPAML SLVAIAAVCV  1080
CVALLFKSSP KVYYVFQPFN WESLGYGYI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-28	162	236	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.8PM8C

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF312222	0.0	KF312222.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015945074.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A445EKE1	0.0	A0A445EKE1_ARAHY; Uncharacterized protein
STRING	XP_007154455.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]