PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.8PB4Y
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 587aa    MW: 67618.3 Da    PI: 5.8559
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.8PB4YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.12.6e-22163253290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn YAk+ GF  rk++ +++  ++  t+++fvC ++g+re   +k   e++r++++etr+gC a+++v+++  +g+w ++ +++ HnHe+ 
  Aradu.8PB4Y 163 FYNLYAKMNGFAARKTRLRQN-AKKLATQQQFVCFRQGFREFAADKeaYERKREPKPETRCGCLAQMRVHLHLeSGRWIISYFDNVHNHEML 253
                  9****************9999.56669*************97666645799999*****************998***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-20163253IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.878341377IPR007527Zinc finger, SWIM-type
SMARTSM005750.0022352379IPR006564Zinc finger, PMZ-type
PfamPF044343.6E-4354376IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MIPIRTGLYV RGLEQDAFVS SVPVVSSVAV RFSVEVIDFA LSKLSYAFVT LLLVVGRMEE  60
EDVASLVHGA PAMADEVSFV GNEEELVSDE PYVCVGDEPS SEASEDANMD GYCGYNDGDD  120
FYESWEDRGI DGIADFGRIN FKEISFDEMR LLHFPDRHVA FAFYNLYAKM NGFAARKTRL  180
RQNAKKLATQ QQFVCFRQGF REFAADKEAY ERKREPKPET RCGCLAQMRV HLHLESGRWI  240
ISYFDNVHNH EMLDGTLTFM LPEMRSREAQ SDMHSVVGHL VLQSPLHDLE RSAAKLLTKE  300
IFILFRPMLS RACTLKVRSC TLTPTSDIYT ISRWGNSHNN WHVSHYPEDS IFKCSCLRME  360
SLGIPCDHIV ALLVHLDFTE IPTSLVLERW SKNARSKMRQ YVEKGPFSWD SMVSCRNWML  420
NDLCREMCVL ASVREDKFET MTEKIRSEIN RLKHDTEAGP STPAVVGQSS TLEGCVQNPL  480
VVRRKKRPKR DSVNRTLVRG VRRCSICHRV GHNRTSCQSN VWQGQRQQPS HEEDVDEDNY  540
YTLNFGEEVD DEYAHYHSQP VGQEEHFGRY EEEFQVPLTD PYYSWHE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1483490RKKRPKRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.8PB4Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020993351.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445E1N80.0A0A445E1N8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-13FAR1-related sequence 10