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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Aradu.898CQ |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family |
C2H2 |
Protein Properties |
Length: 415aa MW: 47891.9 Da PI: 8.6744 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Aradu.898CQ | genome | NCGR_PGC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 18.8 | 4.5e-06 | 70 | 91 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
+C+ Cg sF+ + +L +H+++H
Aradu.898CQ 70 TCQQCGASFKKPAYLLQHMQSH 91
6*******************99 PP
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2 | zf-C2H2 | 16.8 | 1.9e-05 | 135 | 159 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
y+C dC s++rk++L+rH+ H
Aradu.898CQ 135 YVCMvdDCQASYRRKDHLNRHLLQH 159
899999***************9887 PP
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3 | zf-C2H2 | 10.8 | 0.0015 | 164 | 189 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
+kCp +C+ Fs k n+ rH + H
Aradu.898CQ 164 FKCPmeNCNLIFSIKGNMARHVKEiH 189
89********************9988 PP
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4 | zf-C2H2 | 19.6 | 2.5e-06 | 203 | 227 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++Cp Cgk+F+ s L++H +H
Aradu.898CQ 203 FVCPetGCGKVFKFASKLRKHADSH 227
89*******************9888 PP
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5 | zf-C2H2 | 14.5 | 0.0001 | 307 | 332 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
+kC+ C+ Fs+ksnL++H + H
Aradu.898CQ 307 FKCEfkGCSCKFSSKSNLVTHKKAvH 332
89*******************99877 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00355 | 27 | 24 | 47 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.011 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.009 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.29E-8 | 70 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 70 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.29E-8 | 130 | 159 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-10 | 130 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.723 | 135 | 164 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0036 | 135 | 159 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 137 | 159 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.08E-6 | 162 | 190 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 162 | 190 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0086 | 164 | 189 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.162 | 164 | 194 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 166 | 189 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.59E-5 | 197 | 227 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.3E-9 | 201 | 229 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0047 | 203 | 227 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.242 | 203 | 227 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 205 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.3 | 249 | 274 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 251 | 274 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 26 | 277 | 298 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-6 | 288 | 329 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.43E-9 | 288 | 344 | No hit | No description |
SMART | SM00355 | 0.003 | 307 | 332 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.256 | 307 | 337 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 309 | 332 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 331 | 361 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 7.1 | 338 | 364 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 340 | 364 | IPR007087 | Zinc finger, C2H2 |
Sequence ? help Back to Top |
Protein Sequence Length: 415 aa
Download sequence Send
to blast |
MPEMQMDEPM ESGERPVFKD IRRYFCEYCG ICRSKKILIT SHINSQHKDE LEKARAEGNN 60 EAHCEKPNNT CQQCGASFKK PAYLLQHMQS HSLEYTGKIF YSIIGLDGLV SGRETSCEAP 120 SRMPQSRFIQ DERPYVCMVD DCQASYRRKD HLNRHLLQHE GKTFKCPMEN CNLIFSIKGN 180 MARHVKEIHD EGSTSTNVES KQFVCPETGC GKVFKFASKL RKHADSHGKF SSNLIFFVNN 240 QIKLQSVDVV CLEPGCMKHF TNNQCLKEHI ESCHQYVTCD TCGSRQLKKN IKRHLRTHEA 300 DKSLAEFKCE FKGCSCKFSS KSNLVTHKKA VHFKEKPFVC GFPDCGLRFA YKHVRDKHEK 360 TGKHVFTHGD FEEADEQFRS RPRGGRKRVC PTVEMLVRKR VTPPSQLENL LFMQE
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Functional Description ? help
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Source |
Description |
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |