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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.85INT | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 198aa MW: 21446.1 Da PI: 9.1862 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34 | 5.3e-11 | 77 | 124 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Aradu.85INT 77 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 124 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.74E-10 | 71 | 128 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-18 | 71 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-19 | 73 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 73 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-8 | 77 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 79 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
NDSYGNKHRK LEGSFQEENR AGDSKAEVGA SLVAGNKLAR QGGGGGGGGG AAKPSCEQPP 60 KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKVIGKA LVLDEIINYI 120 QSLQRQVEFL SMKLEAVNSR LNMNSVVECF PSKDVQVGNQ PFDIAGMIFG SQATRGYAQG 180 SQSGWLHMQL GGDFDRVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.85INT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015970009.1 | 1e-146 | transcription factor bHLH79 isoform X1 | ||||
Refseq | XP_020997809.1 | 1e-146 | transcription factor bHLH79 isoform X1 | ||||
Refseq | XP_020997813.1 | 1e-146 | transcription factor bHLH79 isoform X1 | ||||
Refseq | XP_025603145.1 | 1e-146 | transcription factor bHLH79 isoform X1 | ||||
Refseq | XP_029154439.1 | 1e-146 | transcription factor bHLH79 isoform X1 | ||||
Swissprot | Q69WS3 | 5e-71 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A445B066 | 1e-136 | A0A445B066_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA17G10290.1 | 3e-92 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1171 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 3e-69 | BIG PETAL P |