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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.859SE | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Trihelix | ||||||||
Protein Properties | Length: 779aa MW: 86642.5 Da PI: 8.2306 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 64.8 | 1.9e-20 | 686 | 767 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++Li++r ++++r++ k +++lWee+s+ + + g++rsp qCk+ w +l ++y+++k+ +++ s +s+++y++++e Aradu.859SE 686 KWKPEEIKKLINMRGKLHDRFQIVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLVQKYQETKNEKGS--S--KSSWQYLEDME 767 7****************************************************************99998..3..446*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 1.5E-67 | 27 | 277 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 8.89E-62 | 28 | 400 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 2.0E-24 | 40 | 240 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 7.1E-10 | 51 | 187 | IPR001279 | Metallo-beta-lactamase |
PROSITE profile | PS50090 | 7.921 | 679 | 743 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-5 | 681 | 745 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 9.3E-17 | 684 | 769 | No hit | No description |
CDD | cd12203 | 1.09E-20 | 685 | 750 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 779 aa Download sequence Send to blast |
MEGPRKSMED SVQRKMEQFY EGKDGPPLRV LPIGGLGEIG MNCMLVGNHD RYILIDAGVM 60 FPDYDELGVQ KIIPDTTFIR KWSHKIEALV ITHGHEDHIG ALPWVIPALD SNTPIFASSF 120 TMELIKKRLK EHGIFLPSRL KIFRTRKKFM AGPFEIEPIR VTHSIPDCCG LVLRCSDGTI 180 LHTGDWKIDE TPLDGKVFDR EALEELSKEG VTLMMSDSTN VLSPGRTISE SVVKDALLRH 240 ISASKGRVIT TQFASNLHRL GSVKAAADLT GRKLVFVGMS LRTYLDAAWK DGKAPIDPST 300 LVKAEDIDAY APKDLLIVTT GSQAEPRAAL NLASYGSSHA FKLTKEDIVL YSAKEEVLRI 360 VKPQHFLPIH GELLFLKEHE LLGKSNGIRH TAVIKNGEML GVSHLRNRRV LSNGFISLGR 420 ENLQLKYSDG DKAFGTSSDL FIDERLKIAL DGIIVVSMEV FRPQRAESLA ENTLNGKIRI 480 TTRCLWLDKG KLLDALHKAA HAALSSCPVK CPLAHMERTV AEVLRKMVRK YSGKRPEVIV 540 IAIENPAAVL AEEINTKLSG KSHVDHGTST LRKIVDGHGK ENQPDTTQIR VNAADANDVE 600 GLLPEEDTGP PTEEAEGDLS DSEEFWKPFI ASSPVEKSIK ANNGYVPRKE HKSNIKKDDS 660 EDIGEANFVK ASSSELKSSK SGKRNKWKPE EIKKLINMRG KLHDRFQIVK GRMALWEEIS 720 QSLLADGISR SPGQCKSLWT SLVQKYQETK NEKGSSKSSW QYLEDMEKIM PDSEAMATK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zq4_A | 3e-66 | 30 | 460 | 11 | 473 | RIBONUCLEASE J 1 |
3zq4_C | 3e-66 | 30 | 460 | 11 | 473 | RIBONUCLEASE J 1 |
3zq4_D | 3e-66 | 30 | 460 | 11 | 473 | RIBONUCLEASE J 1 |
3zq4_E | 3e-66 | 30 | 460 | 11 | 473 | RIBONUCLEASE J 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.859SE |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020985916.1 | 0.0 | uncharacterized protein LOC107463454 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A444XWD1 | 0.0 | A0A444XWD1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA04G37020.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5099 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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