PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.7P61C

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 419aa MW: 48864 Da PI: 6.8784

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.7P61C	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.4	2e-17	86	172	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY +YA++vGF+ +++++ ++ ++ +++ +C++ g+r++++ ++r+++++ ++Cka++ vk++k gkw+++k+el H+H + Aradu.7P61C 86 QFYYNYANKVGFEPHIRNTNFDENGRTPINQSIQCNRDGYRTKKNLV---TQRSNTVSSVHCKARIYVKLDKeLGKWRLSKVELAHTHRC 172 6*******************99**************98776...8899999**********999************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.8E-15	86	173	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.815	332	368	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0051	343	370	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MTFVIDLNTQ PSLEEIHSFD THIDMDDTNI CNSSSNDMDD TNICNSSSNS ATETECTTEV 60 IIHPTISDEE IPKVGMLFGT LEEARQFYYN YANKVGFEPH IRNTNFDENG RTPINQSIQC 120 NRDGYRTKKN LVTQRSNTVS SVHCKARIYV KLDKELGKWR LSKVELAHTH RCDPSLSWMF 180 KKNRELSMHV KDVIERNDQA DIYNIRNIWV PAGMRSTQRS ESMHAFFDKY LTCRSSLIQF 240 VHQYDNCLAD KEQQELECDA ADNRGLIPCA SNSPIEKQFQ YEYTNCIFRD VQAEFVKKCD 300 CNLSPRVVKD NQYFYEVTQQ KIVKGMSIYS EYEVVFCPIS HQVRCNCFRF ESYSILCCHI 360 LSVLSHCRVD KVNSSYILSR WSKNVYRKRT HIRSSHDSRR SDESMNIFRG LCVDFYNVA

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MTFVIDLNTQ PSLEEIHSFD THIDMDDTNI CNSSSNDMDD TNICNSSSNS ATETECTTEV  60
IIHPTISDEE IPKVGMLFGT LEEARQFYYN YANKVGFEPH IRNTNFDENG RTPINQSIQC  120
NRDGYRTKKN LVTQRSNTVS SVHCKARIYV KLDKELGKWR LSKVELAHTH RCDPSLSWMF  180
KKNRELSMHV KDVIERNDQA DIYNIRNIWV PAGMRSTQRS ESMHAFFDKY LTCRSSLIQF  240
VHQYDNCLAD KEQQELECDA ADNRGLIPCA SNSPIEKQFQ YEYTNCIFRD VQAEFVKKCD  300
CNLSPRVVKD NQYFYEVTQQ KIVKGMSIYS EYEVVFCPIS HQVRCNCFRF ESYSILCCHI  360
LSVLSHCRVD KVNSSYILSR WSKNVYRKRT HIRSSHDSRR SDESMNIFRG LCVDFYNVA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.7P61C

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025674257.1	1e-150	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445D114	0.0	A0A445D114_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23517	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-21	far-red elongated hypocotyls 3