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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.7E0N8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C3H | ||||||||
Protein Properties | Length: 145aa MW: 15703.2 Da PI: 9.9194 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3.2e-06 | 5 | 27 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C+ffar + C Gd C+F H Aradu.7E0N8 5 KSKPCSFFAR-HSCMKGDDCPFDH 27 6789******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.591 | 3 | 30 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0041 | 3 | 29 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 5 | 28 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MPSTKSKPCS FFARHSCMKG DDCPFDHQLS KYPCVNFVPG GCALCVSFEE NFPKGSSHQP 60 RKILLANTVQ KQLKLASKGV SFVDVAKLSL PSPTTPKEGT TKVGLSSFDQ STSGTNQTLV 120 EIPKKLPARI PKGINFLAFG KDHFA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.7E0N8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025676059.1 | 2e-54 | zinc finger CCCH domain-containing protein 65 isoform X2 | ||||
TrEMBL | A0A444XFR6 | 7e-53 | A0A444XFR6_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A444XFU4 | 8e-53 | A0A444XFU4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA14G39391.1 | 2e-27 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6650 | 23 | 23 |