![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.7AQ1B | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 416aa MW: 45541.6 Da PI: 9.4554 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.5 | 7.8e-14 | 76 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g Aradu.7AQ1B 76 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 124 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 60.7 | 2.4e-19 | 269 | 326 | 39 | 96 |
EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 39 edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ +++l++ + Aradu.7AQ1B 269 XXXXGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDRQLFIDW 326 55789****************************************8766888787776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.67E-25 | 76 | 131 | No hit | No description |
SuperFamily | SSF54171 | 3.53E-17 | 76 | 132 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.9E-9 | 76 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-28 | 77 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-20 | 77 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.152 | 77 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF101936 | 7.65E-17 | 216 | 326 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.5E-6 | 217 | 330 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.209 | 241 | 329 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-16 | 270 | 327 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-20 | 272 | 330 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.07E-15 | 273 | 315 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 416 aa Download sequence Send to blast |
MDATSSVDES TTCTNDSLSI TLTPATPASP FTATSKKLSP PPPNSLCRVG SGASTIVDPD 60 VGGGVTEVES RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AARAYDIAAQ 120 RFRGKDAVTN FKPLGSVVSN NTAVEDEDFE SEFLNSHSKS EIVDMLRKHT YNDELEQSKR 180 SRGLIGRRLN RAAGNGGSAG MMSSSGACGG KAREQLFEKA VTPSDVGKLN RYGGEGRFAE 240 LRXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXGKVWRFRY SYWNSSQSYV LTKGWSRFVK 300 EKNLKAGDTV CFHRSTGPDR QLFIDWKARS VGNDGVGFFG PIGPVLEPVQ MVRLFGVNIL 360 KLPGSDAGDS NNNNILNINN DNNVAGSIGG CFNGKRKEME LFTLEGSKKP KIIGAL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-32 | 214 | 330 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 394 | 410 | KRKEMELFTLEGSKKPK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.7AQ1B |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015967601.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Refseq | XP_025701788.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9C6M5 | 1e-112 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A444Z3B8 | 0.0 | A0A444Z3B8_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445CZZ2 | 0.0 | A0A445CZZ2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA02G11060.1 | 1e-177 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-108 | RAV family protein |