PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.72K9J
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 593aa    MW: 62985 Da    PI: 8.6309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.72K9JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-053254123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C+k F r  nL+ H r H
  Aradu.72K9J 32 FICEVCNKGFQREQNLQLHRRGH 54
                 89*******************88 PP
2zf-C2H211.80.00072108130123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H +t+
  Aradu.72K9J 108 WKCDKCSKKYAVQSDWKAHSKTC 130
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-63154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.91E-73154No hitNo description
PfamPF121712.9E-53254IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00523254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.993254IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
SMARTSM0035513073103IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-596129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.91E-7103128No hitNo description
SMARTSM00355150108128IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MRVIQNSDSV LEDPDAEVIA LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL  60
KQKTTKEPKR KVYLCPEPTC VHHDPSRALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ  120
SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESARQPPNL NNAIGTHLYG  180
STNNNMALGL SQVGMGMGVG VGVGVGVGVG VGPQQIPTAM QESSTDLLRL SGRTGQLDHH  240
MLPPPPSSFR TSHHQPFFMN DHQNFHGHQG LMHLSDLNNN NNNSMDNNSP SGGGGGANNN  300
SSNNNNNNNN NSNLFNLPFL SSNSTNSSNN SFSDQHGNNN NNNEGNNSFF TGAGGSAIMH  360
QTTSSTAPSL FSNSLETNNN NNNSGSISHM SATALLQKAA QMGATTSNST ASLLKSFGVT  420
STTSAAAKPP HDHHHHLRAA TMVSNAAAAA SYGSIFGSGS EQGNLQDLMN SFATVASAGH  480
SSSMFESGGG SSVGLMAGFD HAYDHSSNSR EHKLHGVSIG GGSDGLTRDF LGVGQMVRTM  540
SSGGGGGGGG VSRREQQQQH CFTLSSMEAE RNSNAAPSGQ SFGSSGGGGG NFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34104172371Zinc finger protein JACKDAW
5b3h_F2e-34104172371Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.72K9J
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-161AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941993.10.0protein indeterminate-domain 4, chloroplastic
TrEMBLA0A445BEB00.0A0A445BEB0_ARAHY; Uncharacterized protein
STRINGGLYMA10G42660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-96indeterminate(ID)-domain 5