PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.71XYU | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 139aa MW: 16549.6 Da PI: 6.9613 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5.1e-09 | 43 | 85 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT++E+ l+ ++ ++ ++ Wk+I+++ k++ +q+ s+ qky Aradu.71XYU 43 WTQDEHRLFFRGYQEVSSH-WKRISEYYVKTKIFNQISSHAQKY 85 *******************.***********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.35 | 35 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-12 | 36 | 91 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-10 | 38 | 89 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.1E-4 | 42 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-6 | 43 | 85 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 139 aa Download sequence Send to blast |
TLSPLPSYST DHNHREEVVP TAEEEVVPTA QEEAAPTKTE YHWTQDEHRL FFRGYQEVSS 60 HWKRISEYYV KTKIFNQISS HAQKYFLHKK ELAKEKKLRK KIVPCFEVFN RWRRICLKEK 120 EHLSGLDDNA EGDGELDFI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.71XYU |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020985520.1 | 9e-46 | WAS/WASL-interacting protein family member 1-like isoform X3 | ||||
TrEMBL | A0A444YZG6 | 3e-44 | A0A444YZG6_ARAHY; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G70000.2 | 4e-11 | MYB_related family protein |