PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.6X6KU | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 272aa MW: 28704.4 Da PI: 7.0626 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.3 | 6.2e-06 | 124 | 145 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp+C+k+Fs++ H+r+H Aradu.6X6KU 124 TCPICSKTFSSWKGAFGHMRKH 145 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 125 | 145 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MEKNQSTSAS TTSLPSLSLS TPVTEPPSSP LVDQPNLSGE EEKLIILKTP EKILTDLTTN 60 NDTNGGGSLP PSPPPPSPPQ MMVSGAIATA VGGGAVVLGG SNIIGPVKRR KASEIIDPPS 120 GTPTCPICSK TFSSWKGAFG HMRKHPDRQY RGFFKPPTFP SASSKAATNA SGNRHEAAGE 180 EGSSADASGE VGEGGASPAV RNLLFDLNLP VEGELWRILA EKRQKHYQLL LTAMKEVVAR 240 QLREKEAEVE KAIWQNAKLE AHAAQLAAEA QV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.6X6KU |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015963399.1 | 1e-152 | uncharacterized protein LOC107487295 | ||||
Refseq | XP_025650762.1 | 1e-152 | uncharacterized protein LOC112746843 | ||||
Refseq | XP_025703292.1 | 1e-152 | uncharacterized protein LOC112804077 | ||||
TrEMBL | A0A444WUV3 | 1e-151 | A0A444WUV3_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10202 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35610.1 | 1e-15 | C2H2 family protein |