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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Aradu.6W7E4 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family |
C3H |
| Protein Properties |
Length: 295aa MW: 31137.4 Da PI: 9.5549 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aradu.6W7E4 | genome | NCGR_PGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 25.2 | 2.8e-08 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt++C+ f Ck+Gd+C+FaHg+
Aradu.6W7E4 102 KTRICNKFNSAEGCKFGDKCHFAHGE 127
89**********************96 PP
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| 2 | zf-CCCH | 38.3 | 2.2e-12 | 263 | 287 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC +f++ G C +GdrC+FaHg
Aradu.6W7E4 263 YKTKLCENFSK-GSCTFGDRCHFAHG 287
9**********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.042 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.8 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.02E-5 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-7 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 1.6 | 42 | 59 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 5.1E-14 | 98 | 131 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.89E-8 | 100 | 131 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.779 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.1E-4 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.0E-6 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 1.21E-15 | 160 | 242 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 1.2E-16 | 169 | 238 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 1.1E-12 | 169 | 239 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 15.158 | 170 | 234 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.89E-15 | 172 | 235 | No hit | No description |
| Pfam | PF00013 | 5.3E-12 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 6.9E-17 | 259 | 292 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.89E-9 | 261 | 292 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.868 | 262 | 289 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.3E-7 | 262 | 288 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.0E-9 | 263 | 287 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MDTRKRGRPE FGFNVNGGLK KNKQELDSLS TGVGSKSKPC TKFFSTAGCP FGEGCHFLHY 60
VPGGYNAVAQ MMNLAPAAPQ ASRNVAAPPP PVPNGSAQSS VKTRICNKFN SAEGCKFGDK 120
CHFAHGEWEL GKPIAHFDDH RAMGPPPVGR MAGPGRMEPP PGPATSFGAN ATAKISVEAS 180
LAGAIIGKGG VNSKQICRQT GAKLSIREHE SDPNLRNIEL EGSFEQIKEA SNMVKELLLT 240
LQMSAPPKSN QGAPGSAAPG SNYKTKLCEN FSKGSCTFGD RCHFAHGAAE LRKGV
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