PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.6TN9T

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 179aa MW: 19970.5 Da PI: 6.7843

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.6TN9T	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.4	1.4e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+++ Aradu.6TN9T 7 PCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQ 104 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Aradu.6TN9T 105 AE 106 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.918	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-44	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MGSGNSPCAS CKLLRRRCAK DCIFAPYFPS DDPQKFAIVH KVFGASNVSK MLQELPIHQR 60 ADAVSSLVYE ANARVRDPVY GCVGAISYLQ NQVSELQMQL AVAQAEILCI QMQHEPSVAA 120 AIPNPQQIME FQEQNNNNNE LTHHHHHHHQ YLNFAAASSS NVIHDSLSRE TFFGHDMVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-49	2	108	7	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-49	2	108	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.6TN9T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015944263.1	1e-132	LOB domain-containing protein 12-like
Refseq	XP_025622885.1	1e-132	LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-75	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A445B875	1e-130	A0A445B875_ARAHY; Uncharacterized protein
STRING	XP_008233810.1	1e-93	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	8e-78	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]