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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.6RE94 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C3H | ||||||||
Protein Properties | Length: 422aa MW: 46310.4 Da PI: 7.2921 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.1 | 8.3e-10 | 48 | 73 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f+rtG C yG +C+++H+ Aradu.6RE94 48 PGEPDCLYFLRTGMCGYGTNCRYNHP 73 5789*********************8 PP | |||||||
2 | zf-CCCH | 38.1 | 2.6e-12 | 91 | 116 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +f++tGtCkyG++Ck++H++ Aradu.6RE94 91 GQPDCEYFLKTGTCKYGSSCKYHHPR 116 5799********************96 PP | |||||||
3 | zf-CCCH | 38.2 | 2.5e-12 | 139 | 161 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H+p Aradu.6RE94 139 SCPYYMRTGSCKFGVACKFHHPP 161 6********************97 PP | |||||||
4 | zf-CCCH | 41.8 | 1.7e-13 | 268 | 293 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ CkF+H++ Aradu.6RE94 268 DQPECRYYMNTGTCKYGSDCKFHHPK 293 689*********************96 PP | |||||||
5 | zf-CCCH | 35.9 | 1.3e-11 | 310 | 335 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+CkyG++CkF H+ Aradu.6RE94 310 PGQAICSYYRIYGICKYGPTCKFDHP 335 5789*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.591 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-6 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.15E-5 | 52 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-4 | 53 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.126 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-7 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-10 | 91 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 94 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 95 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 133 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.901 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-5 | 136 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-10 | 138 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 139 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-6 | 266 | 293 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.605 | 266 | 294 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.9E-11 | 268 | 293 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-7 | 270 | 295 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-6 | 272 | 293 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 309 | 336 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 309 | 337 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-9 | 311 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 314 | 334 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MPENRQVLRN AASNQSGDNI EEAIRRLKIN DNRDRDTAGQ TSPYPDRPGE PDCLYFLRTG 60 MCGYGTNCRY NHPANVSLGT HYGEELPERN GQPDCEYFLK TGTCKYGSSC KYHHPRDRRG 120 AAPVSFNALG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP PHATFGASGV AASPTSMIPA 180 SGYVGGYPYS LPRMPYLSGQ GLQSYVPPFF SSPQGIIPGQ GWNSYMGSMN PAMSTGFLGS 240 NLVYDSVNPG ESLSGGQVVS LNLPDRPDQP ECRYYMNTGT CKYGSDCKFH HPKERIAQSF 300 INPLGLPVRP GQAICSYYRI YGICKYGPTC KFDHPVLAIS QNYRLATPTA LSALDTPLDG 360 NRRGTFQPPE TSPSKLSSDE HQHSDNNINN SQAAEDSSKQ ADHTTSNSFE VASESSLHDQ 420 DA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.6RE94 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015973683.1 | 0.0 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
Refseq | XP_025609024.1 | 0.0 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
TrEMBL | A0A445C4N0 | 0.0 | A0A445C4N0_ARAHY; Uncharacterized protein | ||||
STRING | XP_007141660.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-115 | C3H family protein |