PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6K5DV
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 295aa    MW: 32502.2 Da    PI: 10.0981
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6K5DVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.4e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +v ++G g W+tI +          R+  ++k++w+++
      Aradu.6K5DV  5 KQKWTSEEEAALKAGVVKHGVGKWRTILKDPEfsgvlYLRSNVDLKDKWRNL 56
                     79***********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.155158IPR017930Myb domain
SuperFamilySSF466894.91E-16271IPR009057Homeodomain-like
SMARTSM007171.7E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-13456IPR009057Homeodomain-like
PfamPF002491.7E-7556IPR001005SANT/Myb domain
CDDcd116607.65E-19656No hitNo description
SMARTSM005267.6E-12113179IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.277115184IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.48E-15119193IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-13120185IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.1E-7121177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV VKHGVGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNLSVMA  60
NGWSSREKSR LAIRRVHQAP KHDENPFAVA PFTPSDEDIV DVKPIQASRD VVPFSGPKRL  120
DNLIMEAITT LKETGGSNKT TIAAFIEDQY WAPPDFKRLL SAKLKYLTAC GKLIKVKRRY  180
RIAPTPAYSD RRRSSSLLMD GRQKASLRGD KEETNVLTKS QVDLELAKIR SMSAQEAAAV  240
AARAVAEAEA AIAEAEEAAR EAEAAEADAE AAQAFADAAM KTLKGRNTPK MMIHA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6K5DV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086770.0KF208677.1 Arachis hypogaea putative MYB-related protein 23 (MYB23) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015959388.11e-179telomere repeat-binding factor 1 isoform X1
RefseqXP_015959389.11e-179telomere repeat-binding factor 1 isoform X1
RefseqXP_020995703.11e-179telomere repeat-binding factor 1 isoform X1
RefseqXP_025694382.11e-179telomere repeat-binding factor 1 isoform X1
RefseqXP_025694383.11e-179telomere repeat-binding factor 1 isoform X1
SwissprotQ8VWK41e-105TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLV5T6Q31e-176V5T6Q3_ARAHY; Putative MYB-related protein 23
STRINGXP_007147427.11e-136(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-100telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]