PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6A8PR
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 502aa    MW: 57442.1 Da    PI: 9.4079
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6A8PRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.59.2e-1859145191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.6A8PR  59 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 145
                  6***************998776..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-1559145IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.198304340IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-4313337IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4315342IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MDHSTSDCQL NPSEVDYEFE SNEVPEVYYI RHDWPLSVVD DELVPKVRMT FTTLEDAGKF  60
YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREGKWKSK ISPTEKTNPT AGLNCPARIY  120
IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNDE ADRHIWVPIY  180
LDHHFWVGMR STQRSESMHS FFNKYITRNS SLIQFVKQYD NCLGSREQAK RESDAADFHT  240
VIPCATKSSI EAQFQDAYTH AKYREVQAQF RGKANCITRL KNSALGYSIY EVGEQVSSSI  300
FNKFAVTYDS VAAEVKCQCL LFESRGILCR HALSVLSFEQ VSQVSPRYIL ERWSKKVKRR  360
QTHIKSSHDE PLMEPKSKRF DQLELTAILH RAYDNAMAEM EALKARKKGT SSLSHEDANL  420
ESVNELQSPP RIRTRGRPKN RLGSKLEKQI ANATKKKKTK VLSEINLFDA ASAAHSNCSR  480
YQGHVINYQF RVPVAGDNSL GV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6A8PR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A444X8170.0A0A444X817_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-29far-red elongated hypocotyls 3