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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.60KCI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25612.7 Da PI: 10.5858 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.4e-16 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W + Ed+ll +v+q+G g W++++++ g++R++k+c++rw++yl Aradu.60KCI 9 KGAWAKVEDDLLRACVEQYGEGKWHLVPSRAGLNRCRKSCRLRWLNYL 56 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.7 | 3.6e-15 | 62 | 106 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++++E +l ++ +++lG++ W++Ia +++ gRt++++k++w++y Aradu.60KCI 62 RGEFSEDEVDLMIRMHRLLGNR-WSLIAGRLP-GRTPNDVKNYWNTY 106 899*******************.*********.************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.789 | 4 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-26 | 6 | 103 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 6 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-13 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 9 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.77E-9 | 11 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-22 | 60 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-15 | 61 | 109 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.007 | 61 | 111 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.5E-14 | 62 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.25E-10 | 64 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEGSIGLRKG AWAKVEDDLL RACVEQYGEG KWHLVPSRAG LNRCRKSCRL RWLNYLKPNI 60 KRGEFSEDEV DLMIRMHRLL GNRWSLIAGR LPGRTPNDVK NYWNTYVRRN NKHTSSSSSV 120 PSPSSVVTTV KRHDHINHQV IKPHPRTFSK ASPWLLLKKT STSGYHNNNK QRDGAKAEEE 180 TLLMLTTICL LMSMVKLGVI SFLISICGIH NNFVFLIANE LLHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 3 | 109 | 1 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.60KCI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015946081.1 | 1e-131 | transcription factor MYB90-like | ||||
Refseq | XP_025624112.1 | 1e-131 | transcription factor MYB90 isoform X1 | ||||
Swissprot | Q9FNV9 | 6e-58 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A445B358 | 1e-129 | A0A445B358_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G36966.1 | 7e-75 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 4e-58 | myb domain protein 113 |
Publications ? help Back to Top | |||
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