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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.5RN8L | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 182aa MW: 20055.4 Da PI: 4.6099 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31.7 | 5.1e-10 | 112 | 172 | 1 | 64 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCka 64 +fY +YAk++GF +++++++ k ++ +++ C++ g re+ k+ r+++ + gCk Aradu.5RN8L 112 DFYVTYAKKAGFATKIRTTTFDKITKAPINQAIHCNRDGIRESCVKA---PTRKNTISAAGCKT 172 6******************************************9999...77788888899985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-7 | 112 | 172 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MAESQDEHVS SEDPPLCTSP SRNSLMEVDI VEPLDCVASD VSENLSYEQE NLTGDVAGHG 60 HKSNKATQLS DVTDVGSEEM ELVDELPDHD CLQEDEIPRV GMWFAQLQMA HDFYVTYAKK 120 AGFATKIRTT TFDKITKAPI NQAIHCNRDG IRESCVKAPT RKNTISAAGC KTCKIGFCSR 180 LT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.5RN8L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015954601.1 | 1e-122 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445DWY1 | 1e-117 | A0A445DWY1_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17976 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-07 | FAR1 family protein |