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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.5FE4Y | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 597aa MW: 66397.7 Da PI: 8.8938 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.7e-11 | 288 | 346 | 2 | 55 |
HHHHHHHHHHHHHHHHHH.........HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa.........feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++ f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Aradu.5FE4Y 288 RSKHSATEQRRRSKINDRrvlpilhkiFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 346 889**************88888888889*********9....9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.7E-21 | 283 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-14 | 284 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-8 | 288 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.30E-12 | 288 | 350 | No hit | No description |
SMART | SM00353 | 1.8E-6 | 292 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.064 | 295 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MMELPQARSF GTEGRKPTHD FLSLYSNSTS QQDPRPPSQG SYLKTHDFLR VETKANTKEE 60 ASDETSSTVQ KLPPAAPQPP PSVENHQHLL PGGIGTYSIS HISYFNNNNN NNNNNNNNNN 120 NNNNNNNNQR VPKPEAPLFT VRQATSTDRN DENSNCSSYT SSGFTLWDES AVKKGKTGKE 180 NNIVGDKLIP GETQSAKQGH WTSTEGTPQS FSNNRHNSFN SRSSSQTTGQ RNQSFIEMMK 240 SAKDCAQDEE LDNEETYFLK KESSNPERAE LRVKVDGKST DQKPNTPRSK HSATEQRRRS 300 KINDRRVLPI LHKIFQMLRE LIPHSDQKRD KASFLLEVIE YIHFLQEKVH KYEGSFQGWN 360 HEPEKLMPWR NNDKPAESFE ACGTNSGSGP SPTLLFASKI DEKNITLSPP ITGSSQKLEP 420 GLNTATPFKN MDHPPGITNT TFPIPISSPP NFFPPRKSIG LGEMPHVTHR LPSDAGNGIY 480 QPSVECQTVT ATNEKLKEKE LAIEGGAISI SSVYSKGLLD TLTHALQSSG VDLSQASISV 540 QIELRKQENI IRPTLPMSMC GIKGDEVPSN NQRMMRSRVA TSGKSDQPVK KLKSCKT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.5FE4Y |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015943836.1 | 0.0 | transcription factor BIM1 isoform X1 | ||||
Refseq | XP_015943840.1 | 0.0 | transcription factor BIM1 isoform X1 | ||||
Refseq | XP_015943848.1 | 0.0 | transcription factor BIM1 isoform X1 | ||||
Refseq | XP_025616895.1 | 0.0 | transcription factor BIM1 isoform X1 | ||||
Refseq | XP_025616900.1 | 0.0 | transcription factor BIM1 isoform X1 | ||||
Refseq | XP_025616904.1 | 0.0 | transcription factor BIM1 isoform X1 | ||||
TrEMBL | A0A445AZ30 | 0.0 | A0A445AZ30_ARAHY; Uncharacterized protein | ||||
STRING | XP_004508645.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7252 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 1e-105 | bHLH family protein |