PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Basic Information? help Back to Top

TF ID

Aradu.5E32Q

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 397aa MW: 46419.3 Da PI: 5.1676

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.5E32Q	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.1	1.9e-10	96	156	1	61
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtg 61 +fY +Y+k+ GFs rksk+ k+ +gei+k++fvC ++g+r e+ + +++++++r etrtg Aradu.5E32Q 96 DFYMKYSKSKGFSARKSKTFKN-STGEIYKQKFVCHRQGFRMEKYYTmEKRKKEPRLETRTG 156 6***************9998.8899**************9988556666788888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-8	96	156	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.891	257	295	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MDTEMNEQYQ EDDDFNQQEE LISDQDMMDE HNEFEEDFKD EFTEGAFFSE SEHPEDILEA 60 AYAVDSVQDI TTLKFSKNFA EEIGKYHFYS LQLAFDFYMK YSKSKGFSAR KSKTFKNSTG 120 EIYKQKFVCH RQGFRMEKYY TMEKRKKEPR LETRTGFVGR YVGSRYDLTS FVEHFQRCVA 180 HMRFKEFNAD YESTRGVPVM QTCIELLERY AAELYTHEIF LFFRPFLSRA GSMRVLNIDN 240 TDDCIKYTVY KHGRPDFMWT VDFRQEEMIF MCTCLRMESF GISCKHIVKV LVDRDICEIP 300 WSLVLDRWTK KVKSALNDSS GFTRDVVVIS RQSALVEFSK QLAAVAAKVP ERYEETRDLI 360 MGLYSSYKAA DEGTNQPQSG VAKSSNPYVN QSGVGSG

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MDTEMNEQYQ EDDDFNQQEE LISDQDMMDE HNEFEEDFKD EFTEGAFFSE SEHPEDILEA  60
AYAVDSVQDI TTLKFSKNFA EEIGKYHFYS LQLAFDFYMK YSKSKGFSAR KSKTFKNSTG  120
EIYKQKFVCH RQGFRMEKYY TMEKRKKEPR LETRTGFVGR YVGSRYDLTS FVEHFQRCVA  180
HMRFKEFNAD YESTRGVPVM QTCIELLERY AAELYTHEIF LFFRPFLSRA GSMRVLNIDN  240
TDDCIKYTVY KHGRPDFMWT VDFRQEEMIF MCTCLRMESF GISCKHIVKV LVDRDICEIP  300
WSLVLDRWTK KVKSALNDSS GFTRDVVVIS RQSALVEFSK QLAAVAAKVP ERYEETRDLI  360
MGLYSSYKAA DEGTNQPQSG VAKSSNPYVN QSGVGSG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.5E32Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020982419.1	1e-171	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A444YFB3	0.0	A0A444YFB3_ARAHY; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-17	FAR1-related sequence 5