PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB

Protein Properties

Length: 299aa MW: 33507.4 Da PI: 7.3049

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.59AEA	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.4e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd +l++ + ++G g+W++++ + g+ R +k+c++rw +yl Aradu.59AEA 15 KGLWSPEEDNKLKNHIVKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP
2	Myb_DNA-binding	49.8	8e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E+e ++ +++ lG++ W+ Ia+ ++ gRt++++k++w++yl Aradu.59AEA 68 RGLFSKQEEETILTLHQILGNK-WSQIAQNLP-GRTDNEIKNYWHSYL 113 7889****************.*****.**********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.1E-22	9	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.943	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	3.45E-28	12	109	IPR009057	Homeodomain-like
SMART	SM00717	9.6E-12	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-13	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	1.47E-10	18	62	No hit	No description
PROSITE profile	PS51294	24.88	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-25	65	117	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-15	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-14	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	3.06E-11	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGLQPLEKAK PKYKKGLWSP EEDNKLKNHI VKHGHGCWSS VPIKAGLQRN GKSCRLRWIN 60 YLRPGLKRGL FSKQEEETIL TLHQILGNKW SQIAQNLPGR TDNEIKNYWH SYLKKRVMSN 120 AKEMESHEQV QYATSSSETM DSSSHAVQNL ATQGTQNTYS FTNEACQSSP IPKLLFAEWL 180 TLDHVQCGGN SANSYDESLA LKDGFDSQIS SFQESATVHD AMSQGPFGGD YRNNSLARLA 240 HSSAEEMFNS QLKFGTTMVE NGFIQCIPGV DFSANFNMSN DTMYIYDNSI ISTAAQNGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-23	11	117	23	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269\|PubMed:11581165, ECO:0000269\|PubMed:19482971}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.59AEA

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015941488.1	0.0	transcription factor LAF1
Refseq	XP_025620134.1	0.0	transcription factor LAF1
Swissprot	Q9M0K4	1e-60	LAF1_ARATH; Transcription factor LAF1
TrEMBL	A0A445BFZ3	0.0	A0A445BFZ3_ARAHY; Uncharacterized protein
STRING	GLYMA10G38110.1	1e-133	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3830	31	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48920.1	6e-64	myb domain protein 45

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]